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C3orf52 chromosome 3 open reading frame 52 [ Homo sapiens (human) ]

Gene ID: 79669, updated on 13-Feb-2019

Summary

Official Symbol
C3orf52provided by HGNC
Official Full Name
chromosome 3 open reading frame 52provided by HGNC
Primary source
HGNC:HGNC:26255
See related
Ensembl:ENSG00000114529 MIM:611956
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TTMP
Expression
Broad expression in skin (RPKM 9.2), thyroid (RPKM 5.4) and 15 other tissues See more
Orthologs

Genomic context

See C3orf52 in Genome Data Viewer
Location:
3q13.2
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 3 NC_000003.12 (112086335..112136379)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (111805175..111837073)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene riboflavin kinase pseudogene 2 Neighboring gene transmembrane serine protease 7 Neighboring gene microRNA 567 Neighboring gene germinal center associated signaling and motility Neighboring gene solute carrier family 9 member C1 Neighboring gene chromosome 1 open reading frame 106 pseudogene Neighboring gene ubiquitination factor E4A (UFD2 homolog, yeast) pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ23186

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
TPA-induced transmembrane protein
Names
TPA induced trans-membrane protein
novel endoplasmic reticulum transmembrane protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001171747.1NP_001165218.1  TPA-induced transmembrane protein isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the shorter transcript but encodes the longer isoform (1).
    Source sequence(s)
    AC128688, AK298076, AK303588
    Consensus CDS
    CCDS54620.1
    UniProtKB/Swiss-Prot
    Q5BVD1
    Related
    ENSP00000399392.2, ENST00000431717.6
  2. NM_024616.2NP_078892.2  TPA-induced transmembrane protein isoform 2

    See identical proteins and their annotated locations for NP_078892.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has two additional coding exons in the 3' region, as compared to variant 1. The resulting isoform (2) is shorter and has a different C-terminus, as compared to isoform 1.
    Source sequence(s)
    AA215562, AC128688, AK026839, BC017064, BX104180, DB159226
    Consensus CDS
    CCDS46887.1
    UniProtKB/Swiss-Prot
    Q5BVD1
    Related
    ENSP00000264848.5, ENST00000264848.9

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p12 Primary Assembly

    Range
    112086335..112136379
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_924171.3 RNA Sequence

Reference GRCh38.p12 PATCHES

Genomic

  1. NW_019805492.1 Reference GRCh38.p12 PATCHES

    Range
    1..1516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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