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col4a3bpa collagen, type IV, alpha 3 (Goodpasture antigen) binding protein a [ Danio rerio (zebrafish) ]

Gene ID: 796455, updated on 18-Apr-2019

Summary

Official Symbol
col4a3bpaprovided by ZNC
Official Full Name
collagen, type IV, alpha 3 (Goodpasture antigen) binding protein aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-080724-10
See related
Ensembl:ENSDARG00000024325
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
col4a3bp; zgc:92147; wu:fc37f11

Genomic context

See col4a3bpa in Genome Data Viewer
Location:
chromosome: 5
Exon count:
18
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (50913300..50967971)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (50266707..50321378)
103 previous assembly Zv9 (GCF_000002035.4) 5 NC_007116.5 (52599188..52654897)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene nucleolar protein 6 (RNA-associated) Neighboring gene arylsulfatase family, member K Neighboring gene 3-hydroxy-3-methylglutaryl-CoA reductase a Neighboring gene ankyrin repeat domain 31

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ceramide 1-phosphate binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ceramide 1-phosphate transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ceramide binding ISS
Inferred from Sequence or Structural Similarity
more info
 
intermembrane ceramide transfer activity ISS
Inferred from Sequence or Structural Similarity
more info
 
lipid binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
lipid binding IEA
Inferred from Electronic Annotation
more info
 
phosphatidylinositol-4-phosphate binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
ER to Golgi ceramide transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ER to Golgi ceramide transport ISS
Inferred from Sequence or Structural Similarity
more info
 
ceramide transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
intermembrane lipid transfer IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
lipid transport IEA
Inferred from Electronic Annotation
more info
 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
muscle organ development IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
Golgi apparatus ISS
Inferred from Sequence or Structural Similarity
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
collagen type IV alpha-3-binding protein
Names
WITHDRAWN:zgc:92147
ceramide transfer protein
cert
goodpasture antigen-binding protein
NP_001017914.3
NP_001268801.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017914.4NP_001017914.3  collagen type IV alpha-3-binding protein isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
    Source sequence(s)
    BX000437
    UniProtKB/TrEMBL
    F8W2V5
    Related
    ENSDARP00000124594.1, ENSDART00000149787.3
    Conserved Domains (3) summary
    cd08872
    Location:387620
    START_STARD11-like; Ceramide-binding START domain of mammalian STARD11 and related domains
    cd13283
    Location:23122
    PH_GPBP; Goodpasture antigen binding protein Pleckstrin homology (PH) domain
    pfam00169
    Location:25110
    PH; PH domain
  2. NM_001281872.1NP_001268801.1  collagen type IV alpha-3-binding protein isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon in the coding region compared to variant 1. The resulting protein (isoform 2) is shorter but has the same N- and C-termini compared to isoform 1.
    Source sequence(s)
    BX000437
    UniProtKB/TrEMBL
    F2Z4S5
    Related
    ENSDARP00000153901.1, ENSDART00000190837.1
    Conserved Domains (3) summary
    cd08872
    Location:360594
    START_STARD11-like; Ceramide-binding START domain of mammalian STARD11 and related domains
    cd13283
    Location:23122
    PH_GPBP; Goodpasture antigen binding protein Pleckstrin homology (PH) domain
    pfam00169
    Location:25110
    PH; PH domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    50913300..50967971
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394610.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    43526..97594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001100960.1: Suppressed sequence

    Description
    NM_001100960.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
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