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C22orf46P chromosome 22 putative open reading frame 46, pseudogene [ Homo sapiens (human) ]

Gene ID: 79640, updated on 15-Sep-2022

Summary

Official Symbol
C22orf46Pprovided by HGNC
Official Full Name
chromosome 22 putative open reading frame 46, pseudogeneprovided by HGNC
Gene description
CTA-216E10.6
Primary source
HGNC:HGNC:26294
See related
Ensembl:ENSG00000184208 AllianceGenome:HGNC:26294
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C22orf46
Summary
Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis (RPKM 7.6), brain (RPKM 5.5) and 25 other tissues See more
Orthologs
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Genomic context

See C22orf46P in Genome Data Viewer
Location:
22q13.2
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (41688937..41698136)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (42167914..42177110)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (42084941..42094140)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene protein LLP homolog Neighboring gene RNA, U6 small nuclear 476, pseudogene Neighboring gene small nuclear ribonucleoprotein 13 Neighboring gene meiotic double-stranded break formation protein 1 Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene10 Neighboring gene RNA, U6atac small nuclear 22, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • CTA-216E10.6
  • uncharacterized protein C22orf46

Clone Names

  • FLJ23584

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_160905.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    Z83840
    Related
    ENST00000656592.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    41688937..41698136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    42167914..42177110
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001142964.1: Suppressed sequence

    Description
    NM_001142964.1: This RefSeq was removed because it is now thought that this gene is a pseudogene.
  2. NM_024588.3: Suppressed sequence

    Description
    NM_024588.3: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.