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ARMC7 armadillo repeat containing 7 [ Homo sapiens (human) ]

Gene ID: 79637, updated on 10-Oct-2019

Summary

Official Symbol
ARMC7provided by HGNC
Official Full Name
armadillo repeat containing 7provided by HGNC
Primary source
HGNC:HGNC:26168
See related
Ensembl:ENSG00000125449
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in kidney (RPKM 3.9), lung (RPKM 3.6) and 25 other tissues See more
Orthologs

Genomic context

See ARMC7 in Genome Data Viewer
Location:
17q25.1
Exon count:
4
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (75109969..75130272)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (73106047..73126360)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 80, pseudogene Neighboring gene solute carrier family 16 member 5 Neighboring gene uncharacterized LOC107985034 Neighboring gene 5', 3'-nucleotidase, cytosolic Neighboring gene Jupiter microtubule associated homolog 1 Neighboring gene small ubiquitin like modifier 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ22160

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
armadillo repeat-containing protein 7

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001304271.2NP_001291200.1  armadillo repeat-containing protein 7 isoform 2

    See identical proteins and their annotated locations for NP_001291200.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and uses an alternate splice site in the 5' coding region, resulting in frameshift, compared to variant 1. The encoded isoform (2) is shorter, and has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AC022211, AK300997, BC011728
    Consensus CDS
    CCDS77107.1
    UniProtKB/Swiss-Prot
    Q9H6L4
    Related
    ENSP00000462962.1, ENST00000581078.1
  2. NM_001304272.2NP_001291201.1  armadillo repeat-containing protein 7 isoform 3

    See identical proteins and their annotated locations for NP_001291201.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate 3' terminal exon, resulting in a distinct 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (3) is shorter, and has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AK300997, AW081695
    Consensus CDS
    CCDS77109.1
    UniProtKB/Swiss-Prot
    Q9H6L4
    UniProtKB/TrEMBL
    J3KTE5
    Related
    ENSP00000462939.1, ENST00000584947.1
  3. NM_001304273.2NP_001291202.1  armadillo repeat-containing protein 7 isoform 4

    See identical proteins and their annotated locations for NP_001291202.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate 3' terminal exon, resulting in a distinct 3' coding region and 3' UTR compared to variant 1. The encoded isoform (4) is shorter, and has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AK300997, BF512472, BI826938, CR748475
    Consensus CDS
    CCDS77108.1
    UniProtKB/Swiss-Prot
    Q9H6L4
    UniProtKB/TrEMBL
    J3KST7
    Related
    ENSP00000462642.1, ENST00000582136.5
  4. NM_024585.4NP_078861.1  armadillo repeat-containing protein 7 isoform 1

    See identical proteins and their annotated locations for NP_078861.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AC022211, AK300997, BC011728
    Consensus CDS
    CCDS11714.1
    UniProtKB/Swiss-Prot
    Q9H6L4
    Related
    ENSP00000245543.1, ENST00000245543.6
    Conserved Domains (2) summary
    pfam00514
    Location:87126
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:5086
    ARM; armadillo repeat [structural motif]

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    75109969..75130272
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002958068.1 RNA Sequence

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