Format

Send to:

Choose Destination

OCEL1 occludin/ELL domain containing 1 [ Homo sapiens (human) ]

Gene ID: 79629, updated on 1-Jun-2020

Summary

Official Symbol
OCEL1provided by HGNC
Official Full Name
occludin/ELL domain containing 1provided by HGNC
Primary source
HGNC:HGNC:26221
See related
Ensembl:ENSG00000099330
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FWP009; S863-9
Expression
Ubiquitous expression in kidney (RPKM 11.9), colon (RPKM 9.3) and 25 other tissues See more
Orthologs

Genomic context

See OCEL1 in Genome Data Viewer
Location:
19p13.11
Exon count:
6
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (17226226..17229219)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (17337040..17340028)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene myosin IXB Neighboring gene small nucleolar RNA, H/ACA box 118 Neighboring gene unconventional SNARE in the ER 1 Neighboring gene nuclear receptor subfamily 2 group F member 6 Neighboring gene USH1 protein network component harmonin binding protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ22709

General protein information

Preferred Names
occludin/ELL domain-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024578.3NP_078854.1  occludin/ELL domain-containing protein 1

    See identical proteins and their annotated locations for NP_078854.1

    Status: VALIDATED

    Source sequence(s)
    AK026362, BC029361
    Consensus CDS
    CCDS12351.1
    UniProtKB/Swiss-Prot
    Q9H607
    Related
    ENSP00000215061.3, ENST00000215061.9
    Conserved Domains (1) summary
    pfam07303
    Location:156253
    Occludin_ELL; Occludin homology domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    17226226..17229219
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006722899.4XP_006722962.1  occludin/ELL domain-containing protein 1 isoform X1

    Related
    ENSP00000469261.1, ENST00000600232.5
    Conserved Domains (1) summary
    pfam07303
    Location:156226
    Occludin_ELL; Occludin homology domain
  2. XM_017027306.1XP_016882795.1  occludin/ELL domain-containing protein 1 isoform X3

  3. XM_005260079.2XP_005260136.1  occludin/ELL domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    M0QZ36
    Related
    ENSP00000470270.1, ENST00000597836.5
    Conserved Domains (1) summary
    pfam07303
    Location:100197
    Occludin_ELL; Occludin homology domain
Support Center