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ARMT1 acidic residue methyltransferase 1 [ Homo sapiens (human) ]

Gene ID: 79624, updated on 7-Jun-2020

Summary

Official Symbol
ARMT1provided by HGNC
Official Full Name
acidic residue methyltransferase 1provided by HGNC
Primary source
HGNC:HGNC:17872
See related
Ensembl:ENSG00000146476 MIM:616332
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6orf211
Expression
Ubiquitous expression in thyroid (RPKM 18.3), kidney (RPKM 17.3) and 24 other tissues See more
Orthologs

Genomic context

See ARMT1 in Genome Data Viewer
Location:
6q25.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (151452258..151470101)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (151773422..151791236)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 2 Neighboring gene heat shock protein family A (Hsp70) member 8 pseudogene 15 Neighboring gene required for meiotic nuclear division 1 homolog Neighboring gene coiled-coil domain containing 170 Neighboring gene uncharacterized LOC107986528 Neighboring gene RNA, U6 small nuclear 813, pseudogene Neighboring gene estrogen receptor 1 Neighboring gene uncharacterized LOC107986529

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ12910, DKFZp566I174

Gene Ontology Provided by GOA

Function Evidence Code Pubs
S-adenosylmethionine-dependent methyltransferase activity IDA
Inferred from Direct Assay
more info
PubMed 
enzyme binding IPI
Inferred from Physical Interaction
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein carboxyl O-methyltransferase activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
cellular response to DNA damage stimulus IEA
Inferred from Electronic Annotation
more info
 
dephosphorylation IEA
Inferred from Electronic Annotation
more info
 
methylation IDA
Inferred from Direct Assay
more info
PubMed 
protein methylation IEA
Inferred from Electronic Annotation
more info
 
regulation of response to DNA damage stimulus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of response to DNA damage stimulus IMP
Inferred from Mutant Phenotype
more info
PubMed 

General protein information

Preferred Names
damage-control phosphatase ARMT1
Names
UPF0364 protein C6orf211
protein-glutamate O-methyltransferase
sugar phosphate phosphatase ARMT1
NP_001273491.1
NP_078849.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001286562.1NP_001273491.1  damage-control phosphatase ARMT1 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the 5' region, and it thus differs in its 5' UTR and initiates translation from a downstream in-frame start codon, compared to variant 1. The encoded isoform (b) is shorter at the N-terminus, compared to isoform a.
    Source sequence(s)
    AK022972, AK298490, BC011348, DB443862
    Consensus CDS
    CCDS69224.1
    UniProtKB/Swiss-Prot
    Q9H993
    UniProtKB/TrEMBL
    B4DPT6, F5GZY1
    Related
    ENSP00000444121.1, ENST00000545879.5
    Conserved Domains (1) summary
    pfam01937
    Location:1300
    DUF89; Protein of unknown function DUF89
  2. NM_024573.3NP_078849.1  damage-control phosphatase ARMT1 isoform a

    See identical proteins and their annotated locations for NP_078849.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AK022972, BC011348
    Consensus CDS
    CCDS5233.1
    UniProtKB/Swiss-Prot
    Q9H993
    Related
    ENSP00000356263.3, ENST00000367294.4
    Conserved Domains (1) summary
    pfam01937
    Location:20419
    DUF89; Protein of unknown function DUF89

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    151452258..151470101
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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