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TANGO6 transport and golgi organization 6 homolog [ Homo sapiens (human) ]

Gene ID: 79613, updated on 1-Jun-2020

Summary

Official Symbol
TANGO6provided by HGNC
Official Full Name
transport and golgi organization 6 homologprovided by HGNC
Primary source
HGNC:HGNC:25749
See related
Ensembl:ENSG00000103047
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TMCO7
Expression
Ubiquitous expression in testis (RPKM 3.5), liver (RPKM 3.4) and 25 other tissues See more
Orthologs

Genomic context

See TANGO6 in Genome Data Viewer
Location:
16q22.1
Exon count:
19
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (68843531..69085182)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (68877456..69119085)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 4224 Neighboring gene cadherin 1 Neighboring gene ferritin light chain pseudogene 14 Neighboring gene RNA, U7 small nuclear 42 pseudogene Neighboring gene RNA, U6 small nuclear 898, pseudogene Neighboring gene deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial-like Neighboring gene ribosomal protein S2 pseudogene 45 Neighboring gene hyaluronan synthase 3 Neighboring gene DERPC proline and glycine rich nuclear protein Neighboring gene chromosome transmission fidelity factor 8 Neighboring gene UTP4 small subunit processome component

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ12688, KIAA1746

Gene Ontology Provided by GOA

Process Evidence Code Pubs
protein secretion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
transport and Golgi organization protein 6 homolog
Names
transmembrane and coiled-coil domain-containing protein 7
transmembrane and coiled-coil domains 7

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024562.2NP_078838.1  transport and Golgi organization protein 6 homolog

    See identical proteins and their annotated locations for NP_078838.1

    Status: VALIDATED

    Source sequence(s)
    AB051533, AC009082, AK095333, BQ005531
    Consensus CDS
    CCDS45516.1
    UniProtKB/Swiss-Prot
    Q9C0B7
    UniProtKB/TrEMBL
    B3KTB6
    Related
    ENSP00000261778.1, ENST00000261778.2
    Conserved Domains (3) summary
    pfam10304
    Location:10421073
    RTP1_C2; Required for nuclear transport of RNA pol II C-terminus 2
    pfam10363
    Location:841944
    RTP1_C1; Required for nuclear transport of RNA pol II C-terminus 1
    sd00044
    Location:838867
    HEAT; HEAT repeat [structural motif]

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    68843531..69085182
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011523327.3XP_011521629.1  transport and Golgi organization protein 6 homolog isoform X1

    Conserved Domains (1) summary
    pfam10363
    Location:841901
    RTP1_C1; Required for nuclear transport of RNA pol II C-terminus 1
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