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ARMH3 armadillo like helical domain containing 3 [ Homo sapiens (human) ]

Gene ID: 79591, updated on 15-Apr-2019

Summary

Official Symbol
ARMH3provided by HGNC
Official Full Name
armadillo like helical domain containing 3provided by HGNC
Primary source
HGNC:HGNC:25788
See related
Ensembl:ENSG00000120029
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C10orf76
Expression
Ubiquitous expression in heart (RPKM 8.1), esophagus (RPKM 4.9) and 25 other tissues See more
Orthologs

Genomic context

See ARMH3 in Genome Data Viewer
Location:
10q24.32
Exon count:
33
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 10 NC_000010.11 (101845599..102056237, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (103605356..103815932, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene O-GlcNAcase Neighboring gene KCNIP2 antisense RNA 1 Neighboring gene uncharacterized LOC107984029 Neighboring gene uncharacterized LOC101927445 Neighboring gene potassium voltage-gated channel interacting protein 2 Neighboring gene HPS6 biogenesis of lysosomal organelles complex 2 subunit 3 Neighboring gene LIM domain binding 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Common genetic variants associated with cognitive performance identified using the proxy-phenotype method.
NHGRI GWA Catalog
Genetics of coronary artery calcification among African Americans, a meta-analysis.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ13114, MGC125927

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
armadillo-like helical domain-containing protein 3; UPF0668 protein C10orf76

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024541.3NP_078817.2  armadillo-like helical domain-containing protein 3

    See identical proteins and their annotated locations for NP_078817.2

    Status: VALIDATED

    Source sequence(s)
    AK023176, AK097972, AW936405, DA020448, DA311439, DR002231, DT932690
    Consensus CDS
    CCDS41563.1
    UniProtKB/Swiss-Prot
    Q5T2E6
    UniProtKB/TrEMBL
    B3KUU6
    Related
    ENSP00000359050.4, ENST00000370033.9
    Conserved Domains (1) summary
    pfam08427
    Location:441669
    DUF1741; Domain of unknown function (DUF1741)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p12 Primary Assembly

    Range
    101845599..102056237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006717969.1XP_006718032.1  UPF0668 protein C10orf76 isoform X7

    Conserved Domains (1) summary
    pfam08427
    Location:436599
    DUF1741; Domain of unknown function (DUF1741)
  2. XM_011540157.2XP_011538459.1  UPF0668 protein C10orf76 isoform X9

    Conserved Domains (1) summary
    pfam08427
    Location:385618
    DUF1741; Domain of unknown function (DUF1741)
  3. XM_011540154.2XP_011538456.1  UPF0668 protein C10orf76 isoform X6

    See identical proteins and their annotated locations for XP_011538456.1

    Conserved Domains (1) summary
    pfam08427
    Location:380613
    DUF1741; Domain of unknown function (DUF1741)
  4. XM_011540153.2XP_011538455.1  UPF0668 protein C10orf76 isoform X4

    See identical proteins and their annotated locations for XP_011538455.1

    Conserved Domains (1) summary
    pfam08427
    Location:402635
    DUF1741; Domain of unknown function (DUF1741)
  5. XM_011540152.2XP_011538454.1  UPF0668 protein C10orf76 isoform X2

    See identical proteins and their annotated locations for XP_011538454.1

    Conserved Domains (1) summary
    pfam08427
    Location:414647
    DUF1741; Domain of unknown function (DUF1741)
  6. XM_011540151.3XP_011538453.1  UPF0668 protein C10orf76 isoform X1

    See identical proteins and their annotated locations for XP_011538453.1

    UniProtKB/Swiss-Prot
    Q5T2E6
    Conserved Domains (1) summary
    pfam08427
    Location:441669
    DUF1741; Domain of unknown function (DUF1741)
  7. XM_011540156.2XP_011538458.1  UPF0668 protein C10orf76 isoform X8

    Conserved Domains (1) summary
    pfam08427
    Location:262495
    DUF1741; Domain of unknown function (DUF1741)
  8. XM_017016635.1XP_016872124.1  UPF0668 protein C10orf76 isoform X3

  9. XM_017016636.2XP_016872125.1  UPF0668 protein C10orf76 isoform X5

RNA

  1. XR_001747200.1 RNA Sequence

  2. XR_001747201.1 RNA Sequence

  3. XR_001747202.1 RNA Sequence

  4. XR_001747199.1 RNA Sequence

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