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BC005537 cDNA sequence BC005537 [ Mus musculus (house mouse) ]

Gene ID: 79555, updated on 26-Sep-2022

Summary

Official Symbol
BC005537provided by MGI
Official Full Name
cDNA sequence BC005537provided by MGI
Primary source
MGI:MGI:2441726
See related
Ensembl:ENSMUSG00000019132 AllianceGenome:MGI:2441726
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
8030460C05Rik
Summary
Is expressed in central nervous system and retina. Orthologous to human C6orf62 (chromosome 6 open reading frame 62). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 92.5), ovary adult (RPKM 63.9) and 28 other tissues See more
Orthologs
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Genomic context

See BC005537 in Genome Data Viewer
Location:
13; 13 A3.1
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (24985640..24996882)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (24801657..24812899)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene armadillo-like helical domain containing 2 Neighboring gene geminin Neighboring gene predicted gene, 22358 Neighboring gene acyl-CoA thioesterase 13 Neighboring gene tyrosyl-DNA phosphodiesterase 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Clone Names

  • MGC7474

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C6orf62 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024473.3NP_077793.1  uncharacterized protein C6orf62 homolog

    See identical proteins and their annotated locations for NP_077793.1

    Status: PREDICTED

    Source sequence(s)
    AL589699
    Consensus CDS
    CCDS26379.1
    UniProtKB/Swiss-Prot
    Q99LU8
    UniProtKB/TrEMBL
    A0A6P5R1L1, A0A8C6IB75, Q3TVJ4
    Related
    ENSMUSP00000019276.5, ENSMUST00000019276.12
    Conserved Domains (1) summary
    pfam15130
    Location:1226
    DUF4566; Domain of unknown function (DUF4566)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    24985640..24996882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)