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acd ACD shelterin complex subunit and telomerase recruitment factor [ Danio rerio (zebrafish) ]

Gene ID: 794664, updated on 18-Apr-2019

Summary

Official Symbol
acdprovided by ZNC
Official Full Name
ACD shelterin complex subunit and telomerase recruitment factorprovided by ZNC
Primary source
ZFIN:ZDB-GENE-081022-45
See related
Ensembl:ENSDARG00000078055
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
tpp1; zgc:193816

Genomic context

See acd in Genome Data Viewer
Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (29080642..29094304)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (28809497..28823023)
103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (30417134..30430685)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene vicilin-like seed storage protein At2g18540 Neighboring gene VRK serine/threonine kinase 3 Neighboring gene 2-oxoglutarate and iron-dependent oxygenase domain containing 1 Neighboring gene F-box and leucine-rich repeat protein 8

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
telomeric DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
telomeric DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
heart development IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of telomere maintenance via telomerase IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of telomerase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein localization to chromosome, telomeric region IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
telomere capping IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
telomere capping IEA
Inferred from Electronic Annotation
more info
 
telomere maintenance IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nuclear telomere cap complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nuclear telomere cap complex IEA
Inferred from Electronic Annotation
more info
 
shelterin complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
shelterin complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
telomeric protein TPP1
Names
adrenocortical dysplasia homolog
zfTPP1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001130793.1NP_001124265.1  telomeric protein TPP1

    See identical proteins and their annotated locations for NP_001124265.1

    Status: PROVISIONAL

    Source sequence(s)
    BC162572
    UniProtKB/TrEMBL
    B3DGY9
    Related
    ENSDARP00000142667.1, ENSDART00000173709.2
    Conserved Domains (1) summary
    pfam10341
    Location:6110
    TPP1; Shelterin complex subunit, TPP1/ACD

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    29080642..29094304
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005168914.4XP_005168971.1  telomeric protein TPP1 isoform X1

    UniProtKB/TrEMBL
    A0A1D5NT19
    Related
    ENSDARP00000142991.1, ENSDART00000173576.2
    Conserved Domains (1) summary
    pfam10341
    Location:16120
    TPP1; Shelterin complex subunit, TPP1/ACD
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