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ZBED2 zinc finger BED-type containing 2 [ Homo sapiens (human) ]

Gene ID: 79413, updated on 25-Nov-2021

Summary

Official Symbol
ZBED2provided by HGNC
Official Full Name
zinc finger BED-type containing 2provided by HGNC
Primary source
HGNC:HGNC:20710
See related
Ensembl:ENSG00000177494 MIM:615246
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in thyroid (RPKM 46.0), lung (RPKM 7.6) and 2 other tissues See more
Orthologs
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Genomic context

See ZBED2 in Genome Data Viewer
Location:
3q13.13
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (111592900..111595346, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (111311747..111314193, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374038 Neighboring gene uncharacterized LOC105374039 Neighboring gene ATPase H+ transporting V0 subunit c pseudogene 2 Neighboring gene CD96 molecule Neighboring gene NT5C3A pseudogene 2 Neighboring gene PLCXD2 antisense RNA 1 Neighboring gene phosphatidylinositol specific phospholipase C X domain containing 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC10796

General protein information

Preferred Names
zinc finger BED domain-containing protein 2
Names
zinc finger, BED domain containing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024508.5NP_078784.2  zinc finger BED domain-containing protein 2

    See identical proteins and their annotated locations for NP_078784.2

    Status: VALIDATED

    Source sequence(s)
    AC055748, BC071956, CV575511
    Consensus CDS
    CCDS2960.2
    UniProtKB/Swiss-Prot
    Q9BTP6
    Related
    ENSP00000321370.4, ENST00000317012.5
    Conserved Domains (1) summary
    smart00614
    Location:56109
    ZnF_BED; BED zinc finger

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    111592900..111595346 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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