Format

Send to:

Choose Destination

C1orf35 chromosome 1 open reading frame 35 [ Homo sapiens (human) ]

Gene ID: 79169, updated on 5-Jul-2020

Summary

Official Symbol
C1orf35provided by HGNC
Official Full Name
chromosome 1 open reading frame 35provided by HGNC
Primary source
HGNC:HGNC:19032
See related
Ensembl:ENSG00000143793
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MMTAG2
Expression
Ubiquitous expression in ovary (RPKM 5.8), skin (RPKM 5.7) and 25 other tissues See more
Orthologs

Genomic context

See C1orf35 in Genome Data Viewer
Location:
1q42.13
Exon count:
9
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (228100731..228103325, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (228288428..228293112, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2809 Neighboring gene ADP ribosylation factor 1 Neighboring gene microRNA 3620 Neighboring gene mitochondrial ribosomal protein L55 Neighboring gene family with sequence similarity 96 member A pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC4174

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding HDA PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
neutrophil degranulation TAS
Traceable Author Statement
more info
 
Component Evidence Code Pubs
extracellular region TAS
Traceable Author Statement
more info
 
ficolin-1-rich granule lumen TAS
Traceable Author Statement
more info
 
secretory granule lumen TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
multiple myeloma tumor-associated protein 2
Names
multiple myeloma transforming 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_024319.4NP_077295.1  multiple myeloma tumor-associated protein 2

    See identical proteins and their annotated locations for NP_077295.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript and encodes the protein.
    Source sequence(s)
    AK126087, BC002843
    Consensus CDS
    CCDS1566.1
    UniProtKB/Swiss-Prot
    Q9BU76
    Related
    ENSP00000272139.4, ENST00000272139.5
    Conserved Domains (1) summary
    pfam10159
    Location:1383
    MMtag; Kinase phosphorylation protein

RNA

  1. NR_130975.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) includes an alternate internal exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AK126087, BC002843

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    228100731..228103325 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center