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trnau1apb tRNA selenocysteine 1 associated protein 1b [ Danio rerio (zebrafish) ]

Gene ID: 791478, updated on 17-Nov-2020

Summary

Official Symbol
trnau1apbprovided by ZNC
Official Full Name
tRNA selenocysteine 1 associated protein 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2386
See related
Ensembl:ENSDARG00000056475
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
tr; trn; secp; secpl; secp43; trspap1; trnau1ap; trnau1apl; wu:fa56b0; zgc:77884; wu:fa56b07; wu:fc12c07; wu:fc69f09; zgc:113964
Orthologs

Genomic context

See trnau1apb in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (24310635..24317249, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (24654984..24661600, complement)
103 previous assembly Zv9 (GCF_000002035.4) 2 NC_007113.5 (23546918..23553514)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene myosin heavy chain 7-like Neighboring gene fat storage inducing transmembrane protein 1, like Neighboring gene mitochondrial ribosomal protein L34 Neighboring gene anoctamin 8a

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Clone Names

  • MGC77884, MGC113964

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
mRNA splice site selection IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
tRNA selenocysteine 1-associated protein 1-like
Names
tRNA selenocysteine 1 associated protein 1, like
tRNA selenocysteine 1-associated protein 1
tRNA selenocysteine associated protein 1, like
tRNA selenocysteine-associated protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001029966.2NP_001025137.2  tRNA selenocysteine 1-associated protein 1-like

    Status: VALIDATED

    Source sequence(s)
    AI601817, BQ450001, CB356560, CV489023, CV489035, EB769378
    UniProtKB/TrEMBL
    F1QXG2
    Related
    ENSDARP00000073432.3, ENSDART00000078975.4
    Conserved Domains (2) summary
    cd12610
    Location:790
    RRM1_SECp43; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43)
    cd12612
    Location:98179
    RRM2_SECp43; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    24310635..24317249 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021481362.1XP_021337037.1  tRNA selenocysteine 1-associated protein 1-like isoform X1

    Conserved Domains (2) summary
    cd12610
    Location:790
    RRM1_SECp43; RNA recognition motif 1 in tRNA selenocysteine-associated protein 1 (SECp43)
    cd12612
    Location:98179
    RRM2_SECp43; RNA recognition motif 2 in tRNA selenocysteine-associated protein 1 (SECp43)

RNA

  1. XR_002459978.1 RNA Sequence

    Related
    ENSDART00000146170.3
  2. XR_001800920.2 RNA Sequence

    Related
    ENSDART00000137891.3

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_213251.1: Suppressed sequence

    Description
    NM_213251.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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