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ogg1 8-oxoguanine DNA glycosylase [ Danio rerio (zebrafish) ]

Gene ID: 791194, updated on 6-May-2021

Summary

Official Symbol
ogg1provided by ZNC
Official Full Name
8-oxoguanine DNA glycosylaseprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070112-932
See related
Ensembl:ENSDARG00000060002
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:158858
Orthologs
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Genomic context

See ogg1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (46386139..46406233)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (46378262..46398640)
103 previous assembly Zv9 (GCF_000002035.4) 8 NC_007119.5 (48540011..48591724)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene si:dkey-75a21.2 Neighboring gene glutaminyl-tRNA synthetase 1 Neighboring gene proline-rich transmembrane protein 3-like Neighboring gene sulfotransferase family 1, cytosolic sulfotransferase 7

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 
enables class I DNA-(apurinic or apyrimidinic site) endonuclease activity IEA
Inferred from Electronic Annotation
more info
 
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables oxidized purine nucleobase lesion DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
N-glycosylase/DNA lyase
NP_001116780.1
XP_009302520.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123308.2NP_001116780.1  N-glycosylase/DNA lyase

    See identical proteins and their annotated locations for NP_001116780.1

    Status: VALIDATED

    Source sequence(s)
    AL935148, CR450703
    UniProtKB/TrEMBL
    B0R135
    Related
    ENSDARP00000078516.4, ENSDART00000084081.6
    Conserved Domains (3) summary
    TIGR00588
    Location:14350
    ogg; 8-oxoguanine DNA-glycosylase (ogg)
    cd00056
    Location:167336
    ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
    pfam07934
    Location:16169
    OGG_N; 8-oxoguanine DNA glycosylase, N-terminal domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    46386139..46406233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009304245.3XP_009302520.1  N-glycosylase/DNA lyase isoform X1

    See identical proteins and their annotated locations for XP_009302520.1

    UniProtKB/TrEMBL
    B0R135
    Conserved Domains (3) summary
    TIGR00588
    Location:14350
    ogg; 8-oxoguanine DNA-glycosylase (ogg)
    cd00056
    Location:167336
    ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
    pfam07934
    Location:16169
    OGG_N; 8-oxoguanine DNA glycosylase, N-terminal domain
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