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C1orf116 chromosome 1 open reading frame 116 [ Homo sapiens (human) ]

Gene ID: 79098, updated on 11-Sep-2019

Summary

Official Symbol
C1orf116provided by HGNC
Official Full Name
chromosome 1 open reading frame 116provided by HGNC
Primary source
HGNC:HGNC:28667
See related
Ensembl:ENSG00000182795 MIM:611680
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SARG
Expression
Biased expression in lung (RPKM 46.8), esophagus (RPKM 46.0) and 10 other tissues See more
Orthologs

Genomic context

See C1orf116 in Genome Data Viewer
Location:
1q32.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (207018521..207032761, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (207191866..207208555, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Fc fragment of IgA and IgM receptor Neighboring gene tRNA-Pro (anticodon TGG) 5-1 Neighboring gene uncharacterized LOC107984109 Neighboring gene YOD1 deubiquitinase

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC2742, MGC4309, FLJ36507, DKFZp666H2010

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytosol IDA
Inferred from Direct Assay
more info
 
extracellular exosome HDA PubMed 
plasma membrane IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
specifically androgen-regulated gene protein
Names
specifically androgen-regulated protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001083924.2NP_001077393.1  specifically androgen-regulated gene protein isoform 2

    See identical proteins and their annotated locations for NP_001077393.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon at its 5' end, compared to variant 1, producing a distinct 5' UTR and causing translation initiation at a downstream AUG. The encoded protein (isoform 2) is shorter than isoform 1.
    Source sequence(s)
    AC098935, BG150416, DA859157
    Consensus CDS
    CCDS44306.1
    UniProtKB/Swiss-Prot
    Q9BW04
    Related
    ENSP00000436862.1, ENST00000461135.2
    Conserved Domains (1) summary
    pfam15385
    Location:1355
    SARG; Specifically androgen-regulated gene protein
  2. NM_023938.6NP_076427.2  specifically androgen-regulated gene protein isoform 1

    See identical proteins and their annotated locations for NP_076427.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC098935, BC000765, BG150416, DA859157
    Consensus CDS
    CCDS1475.1
    UniProtKB/Swiss-Prot
    Q9BW04
    Related
    ENSP00000352447.5, ENST00000359470.6
    Conserved Domains (1) summary
    pfam15385
    Location:40601
    SARG; Specifically androgen-regulated gene protein

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    207018521..207032761 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006711530.1XP_006711593.1  specifically androgen-regulated gene protein isoform X1

    See identical proteins and their annotated locations for XP_006711593.1

    UniProtKB/Swiss-Prot
    Q9BW04
    Conserved Domains (1) summary
    pfam15385
    Location:40601
    SARG; Specifically androgen-regulated gene protein
  2. XM_011509973.2XP_011508275.1  specifically androgen-regulated gene protein isoform X2

    See identical proteins and their annotated locations for XP_011508275.1

    UniProtKB/Swiss-Prot
    Q9BW04
    Conserved Domains (1) summary
    pfam15385
    Location:1355
    SARG; Specifically androgen-regulated gene protein
  3. XM_005273259.1XP_005273316.1  specifically androgen-regulated gene protein isoform X2

    See identical proteins and their annotated locations for XP_005273316.1

    UniProtKB/Swiss-Prot
    Q9BW04
    Conserved Domains (1) summary
    pfam15385
    Location:1355
    SARG; Specifically androgen-regulated gene protein
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