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SMIM7 small integral membrane protein 7 [ Homo sapiens (human) ]

Gene ID: 79086, updated on 18-Aug-2020

Summary

Official Symbol
SMIM7provided by HGNC
Official Full Name
small integral membrane protein 7provided by HGNC
Primary source
HGNC:HGNC:28419
See related
Ensembl:ENSG00000214046
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C19orf42
Expression
Ubiquitous expression in thyroid (RPKM 16.9), prostate (RPKM 16.3) and 25 other tissues See more
Orthologs

Genomic context

See SMIM7 in Genome Data Viewer
Location:
19p13.11
Exon count:
8
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (16630741..16660144, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (16741562..16770968, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372295 Neighboring gene mediator complex subunit 26 Neighboring gene uncharacterized LOC105372296 Neighboring gene transmembrane protein 38A Neighboring gene NACHT and WD repeat domain containing 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC2747

Gene Ontology Provided by GOA

Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
small integral membrane protein 7
Names
UPF0608 protein C19orf42

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001300925.2NP_001287854.1  small integral membrane protein 7 isoform 1 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AL702263, BC000817, DB047166
    Consensus CDS
    CCDS74307.1
    UniProtKB/TrEMBL
    B7WNH4
    Related
    ENSP00000351569.5, ENST00000358726.6
  2. NM_024104.4NP_077009.2  small integral membrane protein 7 isoform 2 precursor

    See identical proteins and their annotated locations for NP_077009.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 3' terminal exon, resulting in a novel 3' coding region and 3' UTR. It encodes isoform 2, which has a shorter and distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AL702263, BC001680
    Consensus CDS
    CCDS12348.2
    UniProtKB/Swiss-Prot
    Q9BQ49
    Related
    ENSP00000417147.1, ENST00000487416.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    16630741..16660144 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_244086.4 RNA Sequence

  2. XR_244084.4 RNA Sequence

    Related
    ENST00000465250.6
  3. XR_244085.3 RNA Sequence

  4. XR_244083.3 RNA Sequence

  5. XR_001753761.2 RNA Sequence

  6. XR_001753760.2 RNA Sequence

  7. XR_001753759.2 RNA Sequence

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