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RBAK RB associated KRAB zinc finger [ Bos taurus (cattle) ]

Gene ID: 789791, updated on 4-Jul-2020

Summary

Official Symbol
RBAKprovided by VGNC
Official Full Name
RB associated KRAB zinc fingerprovided by VGNC
Primary source
VGNC:VGNC:50045
See related
BGD:BT17083; Ensembl:ENSBTAG00000010291
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See RBAK in Genome Data Viewer
Location:
chromosome: 25
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ARS-UCD1.2 (GCF_002263795.1) 25 NC_037352.1 (38535911..38549432)
105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 25 AC_000182.1 (39080280..39093800)

Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L12 pseudogene Neighboring gene speedy protein E4 Neighboring gene uncharacterized LOC112444321 Neighboring gene olfactory receptor family 10 subfamily AH member 1

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
RB-associated KRAB zinc finger protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191256.1NP_001178185.1  RB-associated KRAB zinc finger protein

    See identical proteins and their annotated locations for NP_001178185.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000025
    UniProtKB/TrEMBL
    F1MHZ4
    Related
    ENSBTAP00000013588.5, ENSBTAT00000013588.6
    Conserved Domains (6) summary
    smart00349
    Location:868
    KRAB; krueppel associated box
    COG5048
    Location:254695
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:319339
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:401423
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:847
    KRAB; KRAB box
    pfam13465
    Location:579604
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD1.2 Primary Assembly

Genomic

  1. NC_037352.1 Reference ARS-UCD1.2 Primary Assembly

    Range
    38535911..38549432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010819611.2XP_010817913.1  RB-associated KRAB zinc finger protein isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:214655
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:279299
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:361383
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:539564
    zf-H2C2_2; Zinc-finger double domain
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