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Zfp747l1 zinc finger protein 747 like 1 [ Mus musculus (house mouse) ]

Gene ID: 78921, updated on 8-Feb-2024

Summary

Official Symbol
Zfp747l1provided by MGI
Official Full Name
zinc finger protein 747 like 1provided by MGI
Primary source
MGI:MGI:1926171
See related
Ensembl:ENSMUSG00000030823 AllianceGenome:MGI:1926171
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9130019O22Rik
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF764 (zinc finger protein 764). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in large intestine adult (RPKM 4.1), small intestine adult (RPKM 3.2) and 27 other tissues See more
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Genomic context

See Zfp747l1 in Genome Data Viewer
Location:
7 F3; 7 69.49 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (126981432..126986338, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (127382260..127387166, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9710 Neighboring gene ferredoxin 1-like pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E9711 Neighboring gene zinc finger protein 747 Neighboring gene zinc finger protein 764 Neighboring gene STARR-positive B cell enhancer ABC_E4978 Neighboring gene zinc finger protein 764 like 1 Neighboring gene STARR-positive B cell enhancer ABC_E4979 Neighboring gene SMT3 suppressor of mif two 3 homolog 2, pseudogene 2 (S. cerevisiae)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables transcription coregulator activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in cellular response to glucocorticoid stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
uncharacterized protein LOC78921

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030226.3NP_084502.2  uncharacterized protein LOC78921

    See identical proteins and their annotated locations for NP_084502.2

    Status: VALIDATED

    Source sequence(s)
    AC133494
    Consensus CDS
    CCDS40143.1
    UniProtKB/TrEMBL
    G3X941
    Related
    ENSMUSP00000038195.4, ENSMUST00000049052.4
    Conserved Domains (6) summary
    smart00349
    Location:2281
    KRAB; krueppel associated box
    COG5048
    Location:206492
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:182202
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:376398
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:2261
    KRAB; KRAB box
    pfam13465
    Location:447472
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    126981432..126986338 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)