9130019O22Rik RIKEN cDNA 9130019O22 gene [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: 9130019O22Rikprovided by MGI
Official Full Name: RIKEN cDNA 9130019O22 geneprovided by MGI
Primary source: MGI:MGI:1926171
See related: Ensembl:ENSMUSG00000030823 AllianceGenome:MGI:1926171
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF764 (zinc finger protein 764). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Ubiquitous expression in large intestine adult (RPKM 4.1), small intestine adult (RPKM 3.2) and 27 other tissues See more
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Genomic context

Location:: 7; 7 F3

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
109	current	GRCm39 (GCF_000001635.27)	7	NC_000073.7 (126981432..126986338, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	7	NC_000073.6 (127382260..127387166, complement)

Chromosome 7 - NC_000073.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info	PubMed

General protein information

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Preferred Names: uncharacterized protein LOC78921

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_030226.3 → NP_084502.2 uncharacterized protein LOC78921

See identical proteins and their annotated locations for NP_084502.2

Status: VALIDATED

Source sequence(s)

AC133494

Consensus CDS

CCDS40143.1

UniProtKB/TrEMBL

G3X941

Related

ENSMUSP00000038195.4, ENSMUST00000049052.4

Conserved Domains (6) summary

smart00349
Location:22 → 81

KRAB; krueppel associated box

COG5048
Location:206 → 492

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:182 → 202

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:376 → 398

zf-C2H2; Zinc finger, C2H2 type

pfam01352
Location:22 → 61

KRAB; KRAB box

pfam13465
Location:447 → 472

zf-H2C2_2; Zinc-finger double domain