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Ltn1 listerin E3 ubiquitin protein ligase 1 [ Mus musculus (house mouse) ]

Gene ID: 78913, updated on 12-Aug-2019

Summary

Official Symbol
Ltn1provided by MGI
Official Full Name
listerin E3 ubiquitin protein ligase 1provided by MGI
Primary source
MGI:MGI:1926163
See related
Ensembl:ENSMUSG00000052299
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C87237; Rnf160; Zfp294; AV266914; Listerin; 4930528H02Rik
Expression
Ubiquitous expression in testis adult (RPKM 9.3), CNS E18 (RPKM 6.0) and 26 other tissues See more
Orthologs

Genomic context

See Ltn1 in Genome Data Viewer
Location:
16; 16 C3.3
Exon count:
32
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (87376651..87432619, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (87376896..87432851, complement)

Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41484 Neighboring gene N-6 adenine-specific DNA methyltransferase 1 (putative) Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene RWD domain containing 2B Neighboring gene ubiquitin specific peptidase 16 Neighboring gene chaperonin containing Tcp1, subunit 8 (theta)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA0714

Gene Ontology Provided by MGI

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
ribosomal large subunit binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ubiquitin protein ligase activity IDA
Inferred from Direct Assay
more info
PubMed 
ubiquitin-protein transferase activity IDA
Inferred from Direct Assay
more info
PubMed 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
proteasome-mediated ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein autoubiquitination IDA
Inferred from Direct Assay
more info
PubMed 
rescue of stalled ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribosome-associated ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
RQC complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
E3 ubiquitin-protein ligase listerin
Names
RING-type E3 ubiquitin transferase listerin
ring finger protein 160
zfp-294
zinc finger protein 294
NP_001074537.1
XP_006523174.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081068.1NP_001074537.1  E3 ubiquitin-protein ligase listerin

    See identical proteins and their annotated locations for NP_001074537.1

    Status: PROVISIONAL

    Source sequence(s)
    AC140319
    Consensus CDS
    CCDS37382.1
    UniProtKB/Swiss-Prot
    Q6A009
    Related
    ENSMUSP00000038775.7, ENSMUST00000039449.8
    Conserved Domains (1) summary
    pfam13639
    Location:17141763
    zf-RING_2; Ring finger domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000082.6 Reference GRCm38.p6 C57BL/6J

    Range
    87376651..87432619 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006523111.3XP_006523174.1  E3 ubiquitin-protein ligase listerin isoform X1

    Conserved Domains (1) summary
    pfam13639
    Location:9941043
    zf-RING_2; Ring finger domain

RNA

  1. XR_384950.4 RNA Sequence

  2. XR_384951.4 RNA Sequence

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