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4930562C15Rik RIKEN cDNA 4930562C15 gene [ Mus musculus (house mouse) ]

Gene ID: 78809, updated on 27-Nov-2024

Summary

Official Symbol
4930562C15Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930562C15 geneprovided by MGI
Primary source
MGI:MGI:1926059
See related
Ensembl:ENSMUSG00000022518 AllianceGenome:MGI:1926059
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C16orf96 (chromosome 16 open reading frame 96). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 13.3) and lung adult (RPKM 1.2) See more
Orthologs
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Genomic context

See 4930562C15Rik in Genome Data Viewer
Location:
16 A1; 16 2.47 cM
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (4653280..4685555)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (4835416..4867691)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:4726231-4726340 Neighboring gene NmrA-like family domain containing 1 Neighboring gene heme oxygenase 2 Neighboring gene STARR-seq mESC enhancer starr_39943 Neighboring gene cell death inducing Trp53 target 1 Neighboring gene STARR-positive B cell enhancer ABC_E7425 Neighboring gene STARR-seq mESC enhancer starr_39945 Neighboring gene predicted gene, 36513 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:4878205-4878392 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:4879753-4879936 Neighboring gene STARR-positive B cell enhancer ABC_E1919 Neighboring gene UBA-like domain containing 1 Neighboring gene mahogunin, ring finger 1 Neighboring gene predicted gene, 16861

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C16orf96 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030192.1NP_084468.1  uncharacterized protein C16orf96 homolog

    See identical proteins and their annotated locations for NP_084468.1

    Status: PROVISIONAL

    Source sequence(s)
    AC167018
    UniProtKB/Swiss-Prot
    E9QMW4, Q3V087
    Related
    ENSMUSP00000097784.4, ENSMUST00000100211.11
    Conserved Domains (3) summary
    cl14654
    Location:68195
    V_Alix_like; Protein-interacting V-domain of mammalian Alix and related domains
    pfam07271
    Location:314472
    Cytadhesin_P30; Cytadhesin P30/P32
    pfam16043
    Location:760934
    DUF4795; Domain of unknown function (DUF4795)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    4653280..4685555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011246045.2XP_011244347.1  uncharacterized protein C16orf96 homolog isoform X1

    Conserved Domains (2) summary
    pfam07271
    Location:97255
    Cytadhesin_P30; Cytadhesin P30/P32
    pfam16043
    Location:543717
    DUF4795; Domain of unknown function (DUF4795)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001252142.1: Suppressed sequence

    Description
    NM_001252142.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.