Efcab11 EF-hand calcium binding domain 11 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Efcab11provided by MGI
Official Full Name: EF-hand calcium binding domain 11provided by MGI
Primary source: MGI:MGI:1926017
See related: Ensembl:ENSMUSG00000021176 AllianceGenome:MGI:1926017
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: 2610021K21Rik; 2610110A13Rik
Summary: Predicted to enable calcium ion binding activity. Is expressed in central nervous system; lung; and reproductive system. Orthologous to human EFCAB11 (EF-hand calcium binding domain 11). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in CNS E11.5 (RPKM 1.3), testis adult (RPKM 0.7) and 11 other tissues See more
Orthologs: human all
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Genomic context

Location:: 12; 12 E

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
109	current	GRCm39 (GCF_000001635.27)	12	NC_000078.7 (99683790..99849701, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	12	NC_000078.6 (99692195..99884442, complement)

Chromosome 12 - NC_000078.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Targeted (2)

General gene information

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Markers

C80678 (e-PCR)
- UniSTS:185948

NoName (e-PCR)
- UniSTS:236922

Homology

Homologs of the Efcab11 gene: The Efcab11 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, rat, chicken, zebrafish, and frog.
Orthologs from Annotation Pipeline: 352 organisms have orthologs with human gene Efcab11
Orthologs

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables calcium ion binding	IBA Inferred from Biological aspect of Ancestor more info	PubMed
enables metal ion binding	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: EF-hand calcium-binding domain-containing protein 11

Names: EF-hand domain-containing protein C14orf143 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_030172.2 → NP_084448.1 EF-hand calcium-binding domain-containing protein 11

See identical proteins and their annotated locations for NP_084448.1

Status: PROVISIONAL

Source sequence(s)

AC155266, AC160931

Consensus CDS

CCDS26104.1

UniProtKB/Swiss-Prot

Q9D041, Q9D0E5

Related

ENSMUSP00000044808.4, ENSMUST00000046485.5

Conserved Domains (1) summary

COG5126
Location:14 → 152

FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]