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Eif3j1 eukaryotic translation initiation factor 3, subunit J1 [ Mus musculus (house mouse) ]

Gene ID: 78655, updated on 26-Sep-2022

Summary

Official Symbol
Eif3j1provided by MGI
Official Full Name
eukaryotic translation initiation factor 3, subunit J1provided by MGI
Primary source
MGI:MGI:1925905
See related
Ensembl:ENSMUSG00000027236 AllianceGenome:MGI:1925905
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Eif3j; Eif3j2; Eif3s1; Eif3j-1; Eif3j-2; eIF3j-A; eIF3j-B; eIF3-p35; eIF3-alpha; 1810016I04Rik; 2700079K05Rik; eIF-3-alpha-A; eIF-3-alpha-B
Summary
Predicted to enable identical protein binding activity. Predicted to be located in cytosol. Predicted to be part of eukaryotic translation initiation factor 3 complex. Orthologous to human EIF3J (eukaryotic translation initiation factor 3 subunit J). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E11.5 (RPKM 29.5), liver E14 (RPKM 27.9) and 26 other tissues See more
Orthologs
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Genomic context

See Eif3j1 in Genome Data Viewer
Location:
2; 2 E5
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (121859061..121884113)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (122028580..122053632)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 39916 Neighboring gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 Neighboring gene MAGE family member B3 Neighboring gene SPG11, spatacsin vesicle trafficking associated Neighboring gene protein associated with topoisomerase II homolog 2 (yeast) Neighboring gene beta-2 microglobulin Neighboring gene tripartite motif-containing 69

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
part_of eukaryotic translation initiation factor 3 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of eukaryotic translation initiation factor 3 complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
eukaryotic translation initiation factor 3 subunit J
Names
eukaryotic translation initiation factor 3 subunit 1-A
eukaryotic translation initiation factor 3 subunit 1-B
eukaryotic translation initiation factor 3, subunit 1 alpha
eukaryotic translation initiation factor 3, subunit J

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_144545.4NP_653128.2  eukaryotic translation initiation factor 3 subunit J

    See identical proteins and their annotated locations for NP_653128.2

    Status: VALIDATED

    Source sequence(s)
    AK148004, AK161038, CJ207683
    Consensus CDS
    CCDS38219.1
    UniProtKB/Swiss-Prot
    Q3UGC7
    Related
    ENSMUSP00000028668.8, ENSMUST00000028668.8
    Conserved Domains (1) summary
    pfam08597
    Location:15261
    eIF3_subunit; Translation initiation factor eIF3 subunit

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    121859061..121884113
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)