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COL6A5 collagen type VI alpha 5 chain [ Bos taurus (cattle) ]

Gene ID: 785805, updated on 24-Jun-2020

Summary

Gene symbol
COL6A5
Gene description
collagen type VI alpha 5 chain
See related
Ensembl:ENSBTAG00000049122
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See COL6A5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
41
Annotation release Status Assembly Chr Location
106 current ARS-UCD1.2 (GCF_002263795.1) 1 NC_037328.1 (151780369..151939737, complement)
105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 1 AC_000158.1 (153531285..153690320, complement)

Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene phosphoinositide-3-kinase regulatory subunit 4 Neighboring gene collagen type VI alpha 6 chain Neighboring gene collagen alpha-4(VI) chain-like Neighboring gene ubiquitin carboxyl-terminal hydrolase 46-like Neighboring gene uncharacterized LOC112448103

Genomic regions, transcripts, and products

General protein information

Preferred Names
collagen alpha-5(VI) chain
Names
collagen, type VI, alpha 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD1.2 Primary Assembly

Genomic

  1. NC_037328.1 Reference ARS-UCD1.2 Primary Assembly

    Range
    151780369..151939737 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024997173.1XP_024852941.1  collagen alpha-5(VI) chain isoform X2

    Related
    ENSBTAP00000067767.1, ENSBTAT00000080845.1
    Conserved Domains (5) summary
    cd01450
    Location:19602133
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cd01472
    Location:624787
    vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
    pfam03157
    Location:13921722
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam00092
    Location:439608
    VWA; von Willebrand factor type A domain
    cl00057
    Location:29179
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
  2. XM_024997170.1XP_024852938.1  collagen alpha-5(VI) chain isoform X1

    Conserved Domains (5) summary
    cd01450
    Location:22842462
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cd01472
    Location:624787
    vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
    pfam03157
    Location:13921722
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam00092
    Location:439608
    VWA; von Willebrand factor type A domain
    cl00057
    Location:29179
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
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