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COL6A5 collagen type VI alpha 5 chain [ Bos taurus (cattle) ]

Gene ID: 785805, updated on 5-Mar-2024

Summary

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Official Symbol
COL6A5provided by VGNC
Official Full Name
collagen type VI alpha 5 chainprovided by VGNC
Primary source
VGNC:VGNC:109405
See related
Ensembl:ENSBTAG00000049122
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
41
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (151780369..151939729, complement)

Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene phosphoinositide-3-kinase regulatory subunit 4 Neighboring gene collagen type VI alpha 6 chain Neighboring gene collagen alpha-4(VI) chain Neighboring gene ubiquitin carboxyl-terminal hydrolase 46-like Neighboring gene uncharacterized LOC112448103

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent conferring tensile strength IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-5(VI) chain
Names
collagen, type VI, alpha 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    151780369..151939729 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024997170.2 → XP_024852938.1  collagen alpha-5(VI) chain

    UniProtKB/TrEMBL
    A0A3Q1MY36
    Related
    ENSBTAP00000060400.2, ENSBTAT00000078699.2
    Conserved Domains (5) summary
    cd01450
    Location:2284 → 2462
    vWFA_subfamily_ECM; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cd01472
    Location:624 → 787
    vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
    pfam03157
    Location:1392 → 1722
    Glutenin_hmw; High molecular weight glutenin subunit
    pfam00092
    Location:439 → 608
    VWA; von Willebrand factor type A domain
    cl00057
    Location:29 → 179
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

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