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3300005D01Rik RIKEN cDNA 3300005D01 gene [ Mus musculus (house mouse) ]

Gene ID: 78512, updated on 8-Nov-2022

Summary

Official Symbol
3300005D01Rikprovided by MGI
Official Full Name
RIKEN cDNA 3300005D01 geneprovided by MGI
Primary source
MGI:MGI:1925762
See related
Ensembl:ENSMUSG00000096965 AllianceGenome:MGI:1925762
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Acts upstream of or within response to wounding. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in large intestine adult (RPKM 3.0), spleen adult (RPKM 1.6) and 11 other tissues See more
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Genomic context

See 3300005D01Rik in Genome Data Viewer
Location:
17; 17 A1
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (5848932..5853517)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (5798657..5803242)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene zinc finger, DHHC domain containing 14 Neighboring gene predicted gene, 53971 Neighboring gene predicted gene, 41519 Neighboring gene ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9) pseudogene Neighboring gene predicted gene, 35474 Neighboring gene sorting nexin 9

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045079.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longest transcript.
    Source sequence(s)
    AK077272, AV287852
    Related
    ENSMUST00000181484.2
  2. NR_045080.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AK019455, AK077272
    Related
    ENSMUST00000181392.3
  3. NR_045081.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' exon, compared to variant 1.
    Source sequence(s)
    AA008373, AC133198, AK077272

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    5848932..5853517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)