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HMX1 H6 family homeobox 1 [ Bos taurus (domestic cattle) ]

Gene ID: 785113, updated on 27-Dec-2024

Summary

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Official Symbol
HMX1provided by VGNC
Official Full Name
H6 family homeobox 1provided by VGNC
Primary source
VGNC:VGNC:29887
See related
Ensembl:ENSBTAG00000031197
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See HMX1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 6 NC_037333.1 (115031393..115036434, complement)

Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene carboxypeptidase Z Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene adrenoceptor alpha 2C Neighboring gene microRNA mir-1777a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037333.1 Chromosome 6 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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Related articles in PubMed

  1. A non-coding genomic duplication at the HMX1 locus is associated with crop ears in highland cattle. Koch CT, et al. PLoS One, 2013. PMID 24194898, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A non-coding genomic duplication at the HMX1 locus is associated with crop ears in highland cattle.
    Title: A non-coding genomic duplication at the HMX1 locus is associated with crop ears in highland cattle.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein HMX1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037333.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    115031393..115036434 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003586228.5 → XP_003586276.2  homeobox protein HMX1

    UniProtKB/TrEMBL
    E1BG70
    Related
    ENSBTAP00000051029.3, ENSBTAT00000056515.4
    Conserved Domains (1) summary
    pfam00046
    Location:209 → 259
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials