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Pla2g4d phospholipase A2, group IVD [ Mus musculus (house mouse) ]

Gene ID: 78390, updated on 12-Aug-2019

Summary

Official Symbol
Pla2g4dprovided by MGI
Official Full Name
phospholipase A2, group IVDprovided by MGI
Primary source
MGI:MGI:1925640
See related
Ensembl:ENSMUSG00000070719
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pla2delta; cPLA2delta; 2610311B01Rik
Expression
Biased expression in placenta adult (RPKM 4.0), testis adult (RPKM 3.1) and 2 other tissues See more
Orthologs

Genomic context

See Pla2g4d in Genome Data Viewer
Location:
2; 2 E5
Exon count:
22
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (120265866..120289069, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (120091605..120114805, complement)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene EH-domain containing 4 Neighboring gene phospholipase A2, group IVE Neighboring gene predicted gene, 52575 Neighboring gene predicted gene, 52560 Neighboring gene phospholipase A2, group IVF Neighboring gene VPS39 HOPS complex subunit

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
calcium-dependent phospholipase A2 activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
calcium-dependent phospholipase A2 activity ISO
Inferred from Sequence Orthology
more info
 
calcium-dependent phospholipid binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
phospholipase A2 activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
phospholipase A2 activity IDA
Inferred from Direct Assay
more info
PubMed 
phospholipase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
glycerophospholipid catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
glycerophospholipid catabolic process ISO
Inferred from Sequence Orthology
more info
 
lipid catabolic process IEA
Inferred from Electronic Annotation
more info
 
lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
phospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
cytosolic phospholipase A2 delta
Names
cPLA2-delta
NP_001019308.1
XP_006500476.1
XP_011238151.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024137.1NP_001019308.1  cytosolic phospholipase A2 delta

    See identical proteins and their annotated locations for NP_001019308.1

    Status: PROVISIONAL

    Source sequence(s)
    AB195276
    Consensus CDS
    CCDS16617.1
    UniProtKB/Swiss-Prot
    Q50L43
    Related
    ENSMUSP00000092252.4, ENSMUST00000094665.4
    Conserved Domains (3) summary
    cd04036
    Location:32151
    C2_cPLA2; C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)
    smart00022
    Location:283758
    PLAc; Cytoplasmic phospholipase A2, catalytic subunit
    cl11396
    Location:278814
    Patatin_and_cPLA2; Patatins and Phospholipases

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p6 C57BL/6J

    Range
    120265866..120289069 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006500413.4XP_006500476.1  cytosolic phospholipase A2 delta isoform X1

    Conserved Domains (2) summary
    smart00022
    Location:135610
    PLAc; Cytoplasmic phospholipase A2, catalytic subunit
    cl11396
    Location:130666
    Patatin_and_cPLA2; Patatins and Phospholipases
  2. XM_011239849.2XP_011238151.1  cytosolic phospholipase A2 delta isoform X2

    Conserved Domains (2) summary
    smart00022
    Location:99574
    PLAc; Cytoplasmic phospholipase A2, catalytic subunit
    cl11396
    Location:94630
    Patatin_and_cPLA2; Patatins and Phospholipases
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