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Gpr108 G protein-coupled receptor 108 [ Mus musculus (house mouse) ]

Gene ID: 78308, updated on 4-May-2024

Summary

Official Symbol
Gpr108provided by MGI
Official Full Name
G protein-coupled receptor 108provided by MGI
Primary source
MGI:MGI:1925558
See related
Ensembl:ENSMUSG00000005823 AllianceGenome:MGI:1925558
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Lustr2; 1810015L19Rik
Summary
Involved in negative regulation of toll-like receptor signaling pathway. Located in cis-Golgi network membrane. Orthologous to human GPR108 (G protein-coupled receptor 108). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in colon adult (RPKM 41.2), adrenal adult (RPKM 30.0) and 28 other tissues See more
Orthologs
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Genomic context

See Gpr108 in Genome Data Viewer
Location:
17 D; 17 29.74 cM
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (57541914..57555743, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (57234914..57248743, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor (ligand) superfamily, member 14 Neighboring gene complement component 3 Neighboring gene STARR-positive B cell enhancer ABC_E8688 Neighboring gene microRNA 6978 Neighboring gene thyroid hormone receptor interactor 10 Neighboring gene STARR-positive B cell enhancer ABC_E54 Neighboring gene STARR-positive B cell enhancer ABC_E8689 Neighboring gene STARR-positive B cell enhancer ABC_E615 Neighboring gene SH2 domain containing 3A pseudogene Neighboring gene predicted gene, 52326

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (3)  1 citation

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in negative regulation of toll-like receptor signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of immune response IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in transport IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
located_in cis-Golgi network membrane IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in trans-Golgi network ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
protein GPR108
Names
lung seven transmembrane receptor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001308072.1NP_001295001.1  protein GPR108 isoform 2 precursor

    See identical proteins and their annotated locations for NP_001295001.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AK047364, AK159313, BB611826, BE981210
    Consensus CDS
    CCDS89128.1
    UniProtKB/Swiss-Prot
    Q91WD0
    Related
    ENSMUSP00000005975.8, ENSMUST00000005975.8
    Conserved Domains (1) summary
    pfam06814
    Location:234522
    Lung_7-TM_R; Lung seven transmembrane receptor
  2. NM_001308074.1NP_001295003.1  protein GPR108 isoform 3

    See identical proteins and their annotated locations for NP_001295003.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate 5' terminal exon and an alternate splice site in an internal exon, compared to variant 1. This results in a distinct 5' UTR and the use of a downstream in-frame start codon, compared to variant 1. The encoded isoform (3) has a shorter N-terminus than isoform 1.
    Source sequence(s)
    AK047364, AK159313, BE981210, BG079632
    UniProtKB/Swiss-Prot
    Q91WD0
    Conserved Domains (1) summary
    pfam06814
    Location:67354
    Lung_7-TM_R; Lung seven transmembrane receptor
  3. NM_030084.4NP_084360.2  protein GPR108 isoform 1 precursor

    See identical proteins and their annotated locations for NP_084360.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AK159313, BB611826, BE981210
    Consensus CDS
    CCDS28929.1
    UniProtKB/Swiss-Prot
    Q8BXE9, Q91WD0, Q925B1
    Related
    ENSMUSP00000156910.2, ENSMUST00000233568.2
    Conserved Domains (1) summary
    pfam06814
    Location:241529
    Lung_7-TM_R; Lung seven transmembrane receptor

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    57541914..57555743 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017317727.2XP_017173216.1  protein GPR108 isoform X1

    Conserved Domains (1) summary
    pfam06814
    Location:67354
    Lung_7-TM_R; Lung seven transmembrane receptor
  2. XM_017317726.2XP_017173215.1  protein GPR108 isoform X1

    Conserved Domains (1) summary
    pfam06814
    Location:67354
    Lung_7-TM_R; Lung seven transmembrane receptor
  3. XM_011246719.1XP_011245021.1  protein GPR108 isoform X1

    See identical proteins and their annotated locations for XP_011245021.1

    Conserved Domains (1) summary
    pfam06814
    Location:67354
    Lung_7-TM_R; Lung seven transmembrane receptor

RNA

  1. XR_003952213.2 RNA Sequence

  2. XR_876592.3 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001308073.1: Suppressed sequence

    Description
    NM_001308073.1: This RefSeq was removed because currently there is not sufficient data to support this transcript.