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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_007535.1 RefSeqGene
- Range
-
4998..30411
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_887
mRNA and Protein(s)
-
NM_001297575.2 → NP_001284504.1 podocin isoform 2
See identical proteins and their annotated locations for NP_001284504.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
- Source sequence(s)
-
AL160286, BC029141, BI831348, BX095913
- Consensus CDS
-
CCDS72988.1
- UniProtKB/Swiss-Prot
-
Q9NP85
- Related
- ENSP00000356588.4, ENST00000367616.4
- Conserved Domains (1) summary
-
- cl19107
Location:122 → 276
- SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
-
NM_014625.4 → NP_055440.1 podocin isoform 1
See identical proteins and their annotated locations for NP_055440.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AJ279254, AL160286, BC029141, BX095913
- Consensus CDS
-
CCDS1331.1
- UniProtKB/Swiss-Prot
- Q8N6Q5, Q9NP85
- Related
- ENSP00000356587.4, ENST00000367615.9
- Conserved Domains (2) summary
-
- smart00244
Location:123 → 287
- PHB; prohibitin homologues
- cd08827
Location:122 → 344
- SPFH_podocin; Podocin, a subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
179550539..179575948 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005245483.4 → XP_005245540.1 podocin isoform X1
- Conserved Domains (2) summary
-
- smart00244
Location:90 → 228
- PHB; prohibitin homologues
- cl19107
Location:92 → 285
- SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
-
XM_017002298.2 → XP_016857787.1 podocin isoform X2
-
XM_017002299.2 → XP_016857788.1 podocin isoform X3
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
178905541..178930958 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)