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Armcx1 armadillo repeat containing, X-linked 1 [ Mus musculus (house mouse) ]

Gene ID: 78248, updated on 27-Jan-2018

Summary

Official Symbol
Armcx1provided by MGI
Official Full Name
armadillo repeat containing, X-linked 1provided by MGI
Primary source
MGI:MGI:1925498
See related
Ensembl:ENSMUSG00000033460 Vega:OTTMUSG00000019429
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ALEX1; 3010033I09Rik
Expression
Broad expression in CNS E18 (RPKM 17.7), CNS E14 (RPKM 16.8) and 16 other tissues See more
Orthologs

Genomic context

See Armcx1 in Genome Data Viewer
Location:
X; X E3
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (134717913..134721917)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (131252477..131256456)

Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA B230119M05 gene Neighboring gene 60S ribosomal protein L34 pseudogene Neighboring gene armadillo repeat containing, X-linked 4 Neighboring gene predicted gene, 39534 Neighboring gene armadillo repeat containing, X-linked 6 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrion IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
armadillo repeat-containing X-linked protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166377.1NP_001159849.1  armadillo repeat-containing X-linked protein 1

    See identical proteins and their annotated locations for NP_001159849.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. All variants encode the same protein.
    Source sequence(s)
    AK147002, BY129959, CF580092, CJ238664
    Consensus CDS
    CCDS30398.1
    UniProtKB/Swiss-Prot
    Q9CX83
    Related
    ENSMUSP00000108824.1, OTTMUSP00000020944, ENSMUST00000113199.7, OTTMUST00000046388
    Conserved Domains (2) summary
    cd00020
    Location:202287
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam04826
    Location:199440
    Arm_2; Armadillo-like
  2. NM_001166378.1NP_001159850.1  armadillo repeat-containing X-linked protein 1

    See identical proteins and their annotated locations for NP_001159850.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two alternate exons and uses a different splice site in the 5' UTR, compared to variant 1. All variants encode the same protein.
    Source sequence(s)
    BC026488, BY129959, CB209449, CF580092, CJ238664
    Consensus CDS
    CCDS30398.1
    UniProtKB/Swiss-Prot
    Q9CX83
    Related
    ENSMUSP00000108823.1, OTTMUSP00000020948, ENSMUST00000113198.7, OTTMUST00000046392
    Conserved Domains (2) summary
    cd00020
    Location:202287
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam04826
    Location:199440
    Arm_2; Armadillo-like
  3. NM_001166379.1NP_001159851.1  armadillo repeat-containing X-linked protein 1

    See identical proteins and their annotated locations for NP_001159851.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two alternate exons in the 5' UTR, compared to variant 1. All variants encode the same protein.
    Source sequence(s)
    BB863367, BC026488, CF580092, CJ238664
    Consensus CDS
    CCDS30398.1
    UniProtKB/Swiss-Prot
    Q9CX83
    Related
    ENSMUSP00000053909.3, OTTMUSP00000020947, ENSMUST00000051256.9, OTTMUST00000046391
    Conserved Domains (2) summary
    cd00020
    Location:202287
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam04826
    Location:199440
    Arm_2; Armadillo-like
  4. NM_001166380.1NP_001159852.1  armadillo repeat-containing X-linked protein 1

    See identical proteins and their annotated locations for NP_001159852.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks an alternate exon and uses a different splice site in the 5' UTR, compared to variant 1. All variants encode the same protein.
    Source sequence(s)
    BC068228, BY129959
    Consensus CDS
    CCDS30398.1
    UniProtKB/Swiss-Prot
    Q9CX83
    Related
    ENSMUSP00000108822.1, OTTMUSP00000020946, ENSMUST00000113197.1, OTTMUST00000046390
    Conserved Domains (2) summary
    cd00020
    Location:202287
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam04826
    Location:199440
    Arm_2; Armadillo-like
  5. NM_030066.3NP_084342.1  armadillo repeat-containing X-linked protein 1

    See identical proteins and their annotated locations for NP_084342.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses a different splice site in the 5' UTR, compared to variant 1. All variants encode the same protein.
    Source sequence(s)
    BC068228, BY129959
    Consensus CDS
    CCDS30398.1
    UniProtKB/Swiss-Prot
    Q9CX83
    Related
    ENSMUSP00000043965.7, OTTMUSP00000020945, ENSMUST00000035748.13, OTTMUST00000046389
    Conserved Domains (2) summary
    cd00020
    Location:202287
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam04826
    Location:199440
    Arm_2; Armadillo-like

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

    Range
    134717913..134721917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006528627.2XP_006528690.1  armadillo repeat-containing X-linked protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006528690.1

    UniProtKB/Swiss-Prot
    Q9CX83
    Conserved Domains (2) summary
    cd00020
    Location:202287
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam04826
    Location:199440
    Arm_2; Armadillo-like
  2. XM_006528624.2XP_006528687.1  armadillo repeat-containing X-linked protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006528687.1

    UniProtKB/Swiss-Prot
    Q9CX83
    Conserved Domains (2) summary
    cd00020
    Location:202287
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam04826
    Location:199440
    Arm_2; Armadillo-like
  3. XM_006528625.2XP_006528688.1  armadillo repeat-containing X-linked protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006528688.1

    UniProtKB/Swiss-Prot
    Q9CX83
    Conserved Domains (2) summary
    cd00020
    Location:202287
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam04826
    Location:199440
    Arm_2; Armadillo-like
  4. XM_006528626.2XP_006528689.1  armadillo repeat-containing X-linked protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006528689.1

    UniProtKB/Swiss-Prot
    Q9CX83
    Related
    ENSMUSP00000108826.1, OTTMUSP00000020976, ENSMUST00000113201.7, OTTMUST00000046456
    Conserved Domains (2) summary
    cd00020
    Location:202287
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam04826
    Location:199440
    Arm_2; Armadillo-like
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