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Lpar4 lysophosphatidic acid receptor 4 [ Mus musculus (house mouse) ]

Gene ID: 78134, updated on 18-Sep-2018

Summary

Official Symbol
Lpar4provided by MGI
Official Full Name
lysophosphatidic acid receptor 4provided by MGI
Primary source
MGI:MGI:1925384
See related
Ensembl:ENSMUSG00000049929 Vega:OTTMUSG00000018372
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
LPA4; p2y9; Gpr23; 5730485F04Rik
Expression
Biased expression in limb E14.5 (RPKM 7.9), CNS E11.5 (RPKM 2.4) and 10 other tissues See more
Orthologs

Genomic context

See Lpar4 in Genome Data Viewer
Location:
X; X D
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (106920625..106933899)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (104115964..104129238)

Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L37 pseudogene Neighboring gene retrotransposon Gag like 3 Neighboring gene purinergic receptor P2Y, G-protein coupled 10 Neighboring gene purinergic receptor P2Y, G-protein coupled 10B

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
G protein-coupled receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
lipid binding IEA
Inferred from Electronic Annotation
more info
 
lysophosphatidic acid binding IDA
Inferred from Direct Assay
more info
PubMed 
lysophosphatidic acid receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
lysophosphatidic acid receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
nuclear body ISO
Inferred from Sequence Orthology
more info
 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
lysophosphatidic acid receptor 4
Names
G protein-coupled receptor 23
LPA receptor 4
LPA-4
P2Y purinoceptor 9
purinergic receptor 9

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175271.4NP_780480.2  lysophosphatidic acid receptor 4

    See identical proteins and their annotated locations for NP_780480.2

    Status: VALIDATED

    Source sequence(s)
    AL670943, BB619126, BC138893
    Consensus CDS
    CCDS30345.1
    UniProtKB/Swiss-Prot
    Q8BLG2
    Related
    ENSMUSP00000053986.7, OTTMUSP00000019932, ENSMUST00000060576.7, OTTMUST00000044364
    Conserved Domains (1) summary
    cd15155
    Location:40322
    7tmA_LPAR4; lysophosphatidic acid receptor 4, member of the class A family of seven-transmembrane G protein-coupled receptors

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

    Range
    106920625..106933899
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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