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LRRC46 leucine rich repeat containing 46 [ Bos taurus (cattle) ]

Gene ID: 780880, updated on 5-Mar-2024

Summary

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Official Symbol
LRRC46provided by VGNC
Official Full Name
leucine rich repeat containing 46provided by VGNC
Primary source
VGNC:VGNC:52801
See related
BGD:BT26406; Ensembl:ENSBTAG00000001830
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (38627367..38631920, complement)

Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene Sp6 transcription factor Neighboring gene secernin 2 Neighboring gene mitochondrial ribosomal protein L10 Neighboring gene oxysterol binding protein like 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC137144

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 46

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079799.1 → NP_001073267.1  leucine-rich repeat-containing protein 46

    See identical proteins and their annotated locations for NP_001073267.1

    Status: PROVISIONAL

    Source sequence(s)
    BC112534
    UniProtKB/TrEMBL
    A0A3Q1NH76, Q2KIR9
    Related
    ENSBTAP00000002392.3, ENSBTAT00000002392.4
    Conserved Domains (3) summary
    sd00031
    Location:47 → 68
    LRR_1; leucine-rich repeat [structural motif]
    pfam13855
    Location:68 → 123
    LRR_8; Leucine rich repeat
    cl28111
    Location:227 → 312
    Marek_A; Marek's disease glycoprotein A

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    38627367..38631920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010816176.4 → XP_010814478.1  leucine-rich repeat-containing protein 46 isoform X1

    See identical proteins and their annotated locations for XP_010814478.1

    Conserved Domains (3) summary
    sd00031
    Location:52 → 73
    LRR_1; leucine-rich repeat [structural motif]
    pfam12799
    Location:72 → 113
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:73 → 128
    LRR_8; Leucine rich repeat

  2. XM_024980524.1 → XP_024836292.1  leucine-rich repeat-containing protein 46 isoform X4

    UniProtKB/TrEMBL
    A0A3Q1NH76, Q2KIR9
    Conserved Domains (3) summary
    sd00031
    Location:47 → 68
    LRR_1; leucine-rich repeat [structural motif]
    pfam13855
    Location:68 → 123
    LRR_8; Leucine rich repeat
    cl28111
    Location:227 → 312
    Marek_A; Marek's disease glycoprotein A

  3. XM_010816175.2 → XP_010814477.1  leucine-rich repeat-containing protein 46 isoform X1

    See identical proteins and their annotated locations for XP_010814477.1

    Conserved Domains (3) summary
    sd00031
    Location:52 → 73
    LRR_1; leucine-rich repeat [structural motif]
    pfam12799
    Location:72 → 113
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:73 → 128
    LRR_8; Leucine rich repeat

  4. XM_010816177.4 → XP_010814479.1  leucine-rich repeat-containing protein 46 isoform X2

    See identical proteins and their annotated locations for XP_010814479.1

    UniProtKB/TrEMBL
    A0A3Q1NH76
    Conserved Domains (4) summary
    sd00031
    Location:47 → 68
    LRR_1; leucine-rich repeat [structural motif]
    pfam13855
    Location:68 → 123
    LRR_8; Leucine rich repeat
    pfam15069
    Location:176 → 226
    FAM163; FAM163 family
    cl28111
    Location:251 → 336
    Marek_A; Marek's disease glycoprotein A

  5. XM_010816178.3 → XP_010814480.1  leucine-rich repeat-containing protein 46 isoform X2

    See identical proteins and their annotated locations for XP_010814480.1

    UniProtKB/TrEMBL
    A0A3Q1NH76
    Conserved Domains (4) summary
    sd00031
    Location:47 → 68
    LRR_1; leucine-rich repeat [structural motif]
    pfam13855
    Location:68 → 123
    LRR_8; Leucine rich repeat
    pfam15069
    Location:176 → 226
    FAM163; FAM163 family
    cl28111
    Location:251 → 336
    Marek_A; Marek's disease glycoprotein A

  6. XM_024980523.2 → XP_024836291.1  leucine-rich repeat-containing protein 46 isoform X3

    UniProtKB/TrEMBL
    A0A3Q1NH76
    Conserved Domains (3) summary
    sd00031
    Location:52 → 73
    LRR_1; leucine-rich repeat [structural motif]
    pfam13855
    Location:73 → 128
    LRR_8; Leucine rich repeat
    cl28111
    Location:232 → 317
    Marek_A; Marek's disease glycoprotein A

  7. XM_010816179.4 → XP_010814481.1  leucine-rich repeat-containing protein 46 isoform X3

    UniProtKB/TrEMBL
    A0A3Q1NH76
    Conserved Domains (3) summary
    sd00031
    Location:52 → 73
    LRR_1; leucine-rich repeat [structural motif]
    pfam13855
    Location:73 → 128
    LRR_8; Leucine rich repeat
    cl28111
    Location:232 → 317
    Marek_A; Marek's disease glycoprotein A

  8. XM_010816174.4 → XP_010814476.1  leucine-rich repeat-containing protein 46 isoform X1

    See identical proteins and their annotated locations for XP_010814476.1

    Related
    ENSBTAP00000071277.2, ENSBTAT00000081992.2
    Conserved Domains (3) summary
    sd00031
    Location:52 → 73
    LRR_1; leucine-rich repeat [structural motif]
    pfam12799
    Location:72 → 113
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:73 → 128
    LRR_8; Leucine rich repeat
Nucleotide Protein Strain
Heading Accession and Version

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