SNRPN small nuclear ribonucleoprotein polypeptide N [Bos taurus (domestic cattle)] - Gene

Summary

Official Symbol: SNRPNprovided by VGNC
Official Full Name: small nuclear ribonucleoprotein polypeptide Nprovided by VGNC
Primary source: VGNC:VGNC:35082
See related: BGD:BT24039; EnsemblRapid:ENSBTAG00070006585
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Bos taurus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs: all
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Genomic context

Location:: chromosome: 21

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_12	current	ARS-UCD2.0 (GCF_002263795.3)	21	NC_037348.1 (1937668..1961040)

Chromosome 21 - NC_037348.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_037348.1 Chromosome 21 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Dominette sequence data
BioProject: PRJNA294306
Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Results suggest that artificial reproductive techniques, such as prolonged in vitro culture and SCNT, lead to abnormal reprogramming of imprinting of SNRPN gene by altering methylation levels at this locus.
Title: In vitro culture and somatic cell nuclear transfer affect imprinting of SNRPN gene in pre- and post-implantation stages of development in cattle.
SNRPN methylation profiles previously observed in mouse and human studies are also conserved in cattle
Title: Bovine SNRPN methylation imprint in oocytes and day 17 in vitro-produced and somatic cell nuclear transfer embryos.

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General gene information

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Markers

PMC21909P1 (e-PCR)
- UniSTS:272077

MARC_54553-54554:1155053829:1 (e-PCR)
- UniSTS:508149

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of U1 snRNP	IEA Inferred from Electronic Annotation more info	PubMed
part_of U2 snRNP	IEA Inferred from Electronic Annotation more info	PubMed
part_of U2-type prespliceosome	IEA Inferred from Electronic Annotation more info	PubMed
part_of U4 snRNP	IEA Inferred from Electronic Annotation more info	PubMed
part_of U4/U6 x U5 tri-snRNP complex	IEA Inferred from Electronic Annotation more info	PubMed
part_of U5 snRNP	IEA Inferred from Electronic Annotation more info	PubMed
part_of catalytic step 2 spliceosome	IEA Inferred from Electronic Annotation more info	PubMed
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: small nuclear ribonucleoprotein-associated protein N

Names: sm protein N; sm-N; smN; snRNP-N

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.