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PARK7 Parkinsonism associated deglycase [ Sus scrofa (pig) ]

Gene ID: 780404, updated on 17-Aug-2024

Summary

Official Symbol
PARK7provided by VGNC
Official Full Name
Parkinsonism associated deglycaseprovided by VGNC
Primary source
VGNC:VGNC:91181
See related
Ensembl:ENSSSCG00000003385
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 371.0), ovary (RPKM 338.2) and 8 other tissues See more
Orthologs
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Genomic context

See PARK7 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (68629327..68645147)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (63023779..63033855, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene urotensin 2 Neighboring gene TNF receptor superfamily member 9 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene ERBB receptor feedback inhibitor 1 Neighboring gene serine/arginine-rich splicing factor 3-like Neighboring gene uncharacterized LOC110261087

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein deglycase activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in guanine deglycation, glyoxal removal IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in protein deglycation, glyoxal removal IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
Parkinson disease protein 7
Names
DJ-1 protein
Parkinson disease (autosomal recessive, early onset) 7
NP_001072131.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001078663.1NP_001072131.1  Parkinson disease protein 7

    See identical proteins and their annotated locations for NP_001072131.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ007624
    UniProtKB/TrEMBL
    A0A4X1W8H4, A0A4X1W9T4, A0A5G2QIK1, A0A8D0IT98, A0A8D1EM83, F1RII4, Q0R678
    Related
    ENSSSCP00000003670.3, ENSSSCT00000003756.5
    Conserved Domains (2) summary
    cd03135
    Location:6172
    GATase1_DJ-1; Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1
    TIGR01383
    Location:5184
    not_thiJ; DJ-1 family protein

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    68629327..68645147
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)