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rora RAR related orphan receptor A [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 780120, updated on 9-Oct-2019

Summary

Official Symbol
roraprovided by Xenbase
Official Full Name
RAR related orphan receptor Aprovided by Xenbase
Primary source
Xenbase:XB-GENE-478535
See related
Ensembl:ENSXETG00000007210
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
ror1; ror2; ror3; rzra; nr1f1; rzr-alpha
Orthologs

Genomic context

See rora in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (83887927..83948384, complement)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668240.1 (53418267..53477657, complement)

Chromosome 3 - NC_030679.1Genomic Context describing neighboring genes Neighboring gene annexin A2 Neighboring gene interactor of little elongation complex ELL subunit 2 Neighboring gene uncharacterized LOC100487883 Neighboring gene ribonuclease P and MRP subunit p25

Genomic regions, transcripts, and products

Pathways from BioSystems

General protein information

Preferred Names
nuclear receptor ROR-alpha
Names
RAR-related orphan receptor alpha

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079195.1NP_001072663.1  nuclear receptor ROR-alpha

    See identical proteins and their annotated locations for NP_001072663.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123953
    UniProtKB/TrEMBL
    Q08D40
    Conserved Domains (2) summary
    cd06968
    Location:10104
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    cl11397
    Location:212256
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030679.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    83887927..83948384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012966750.2XP_012822204.1  nuclear receptor ROR-alpha isoform X2

    Related
    ENSXETP00000007757.1, ENSXETT00000033230.1
    Conserved Domains (2) summary
    cd06939
    Location:212451
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:10104
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
  2. XM_012966749.2XP_012822203.1  nuclear receptor ROR-alpha isoform X1

    Conserved Domains (2) summary
    cd06939
    Location:213452
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:11105
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
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