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c3h17orf49 chromosome 3 C17orf49 homolog [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 779635, updated on 5-Mar-2024

Summary

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Official Symbol
c3h17orf49provided by Xenbase
Official Full Name
chromosome 3 C17orf49 homologprovided by Xenbase
Primary source
Xenbase:XB-GENE-5900247
See related
Ensembl:ENSXETG00000017227
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
bap18; c17orf49
Orthologs
human mouse all
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Genomic context

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See c3h17orf49 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (142456925..142463001)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (131253762..131258278)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene proline, glutamate and leucine rich protein 1 Neighboring gene ribonuclease K Neighboring gene U2 spliceosomal RNA Neighboring gene P2Y purinoceptor 4 Neighboring gene acetylcholinesterase (Cartwright blood group)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC145240

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
involved_in regulation of axonogenesis IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in axon IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in dendrite IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in neuronal cell body IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
chromatin complexes subunit BAP18

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001078721.1 → NP_001072189.1  chromatin complexes subunit BAP18

    See identical proteins and their annotated locations for NP_001072189.1

    Status: PROVISIONAL

    Source sequence(s)
    BC118723
    UniProtKB/TrEMBL
    A0A803KKJ6, F7DYR0, Q0VFS1
    Conserved Domains (1) summary
    pfam00249
    Location:41 → 77
    Myb_DNA-binding; Myb-like DNA-binding domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    142456925..142463001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018092149.2 → XP_017947638.1  chromatin complexes subunit BAP18 isoform X4

    UniProtKB/TrEMBL
    A0A8J0T2D1
    Conserved Domains (1) summary
    pfam00249
    Location:41 → 77
    Myb_DNA-binding; Myb-like DNA-binding domain

  2. XM_012953409.3 → XP_012808863.1  chromatin complexes subunit BAP18 isoform X1

    UniProtKB/TrEMBL
    A0A803KKJ6, A0A8J0SA42
    Conserved Domains (1) summary
    pfam00249
    Location:41 → 77
    Myb_DNA-binding; Myb-like DNA-binding domain

  3. XM_012953410.3 → XP_012808864.1  chromatin complexes subunit BAP18 isoform X3

    UniProtKB/TrEMBL
    A0A803KBS0, A0A8J0S5S3

  4. XM_018092148.2 → XP_017947637.1  chromatin complexes subunit BAP18 isoform X2

    UniProtKB/TrEMBL
    A0A803KKJ6, A0A8J0T142
    Related
    ENSXETP00000037525.5, ENSXETT00000037525.5
    Conserved Domains (1) summary
    pfam00249
    Location:41 → 77
    Myb_DNA-binding; Myb-like DNA-binding domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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