Format

Send to:

Choose Destination

bhlhe40 basic helix-loop-helix family member e40 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 779502, updated on 15-Nov-2019

Summary

Official Symbol
bhlhe40provided by Xenbase
Official Full Name
basic helix-loop-helix family member e40provided by Xenbase
Primary source
Xenbase:XB-GENE-486416
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
dec1; bhlhb2; stra13; stra14; sharp-2
Orthologs

Genomic context

See bhlhe40 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (119655651..119660382)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668236.1 (126769249..126774001, complement)

Chromosome 4 - NC_030680.1Genomic Context describing neighboring genes Neighboring gene sulfatase modifying factor 1 Neighboring gene inositol 1,4,5-trisphosphate receptor type 1 Neighboring gene ADP ribosylation factor like GTPase 8B Neighboring gene ER degradation enhancing alpha-mannosidase like protein 1

Genomic regions, transcripts, and products

General protein information

Preferred Names
class E basic helix-loop-helix protein 40
Names
basic helix-loop-helix domain containing, class B, 2
differentiated embryo chondrocyte expressed gene 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030680.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    119655651..119660382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004914135.3XP_004914192.1  class E basic helix-loop-helix protein 40 isoform X1

    Conserved Domains (2) summary
    cd00083
    Location:76129
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam07527
    Location:160192
    Hairy_orange; Hairy Orange
  2. XM_002938312.4XP_002938358.1  class E basic helix-loop-helix protein 40 isoform X2

    Conserved Domains (2) summary
    cd00083
    Location:75128
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam07527
    Location:159191
    Hairy_orange; Hairy Orange
Support Center