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per1 period circadian regulator 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 779488, updated on 9-Oct-2019

Summary

Official Symbol
per1provided by Xenbase
Official Full Name
period circadian regulator 1provided by Xenbase
Primary source
Xenbase:XB-GENE-495464
See related
Ensembl:ENSXETG00000021388
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
per; hper; rigui; xPer1; period1
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See per1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
18
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (131696957..131722883, complement)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668326.1 (337919..363744, complement)

Chromosome 3 - NC_030679.1Genomic Context describing neighboring genes Neighboring gene erythroid membrane-associated protein-like Neighboring gene CTS telomere maintenance complex component 1 Neighboring gene vesicle associated membrane protein 2 Neighboring gene aurora kinase B

Genomic regions, transcripts, and products

Pathways from BioSystems

  • Herpes simplex infection, organism-specific biosystem (from KEGG)
    Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
  • Herpes simplex infection, conserved biosystem (from KEGG)
    Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

General gene information

Homology

General protein information

Preferred Names
period circadian protein homolog 1
Names
period 1
period circadian clock 1
period homolog 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001197229.1NP_001184158.1  period circadian protein homolog 1

    Status: VALIDATED

    Source sequence(s)
    AAMC01122707, AAMC01122708, BC121904
    UniProtKB/TrEMBL
    Q0P4U2
    Related
    ENSXETP00000044779.1, ENSXETT00000046102.1
    Conserved Domains (3) summary
    cd00130
    Location:345446
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam08447
    Location:358442
    PAS_3; PAS fold
    pfam12114
    Location:10521210
    Period_C; Period protein 2/3C-terminal region

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030679.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    131696957..131722883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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