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taf9b.S TATA-box binding protein associated factor 9b S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 779429, updated on 11-Apr-2024

Summary

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Official Symbol
taf9b.S
Official Full Name
TATA-box binding protein associated factor 9b S homeolog
Primary source
Xenbase:XB-GENE-973358
Locus tag
XELAEV_18042294mg
See related
EnsemblRapid:ENSXLAG00005010328
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
e(y)1; taf9b
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Genomic context

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Location:
chromosome: 8S
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (74803915..74818642)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (72446589..72461215)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene cysteinyl leukotriene receptor 1 S homeolog Neighboring gene fibronectin type III domain containing 3C S homeolog Neighboring gene 5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled S homeolog Neighboring gene interleukin 13 receptor subunit alpha 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC154866

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
  
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within RNA polymerase II preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
TATA-box binding protein associated factor 9b S homeolog
Names
TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa
enhancer of yellow 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097047.1 → NP_001090516.1  TATA-box binding protein associated factor 9b S homeolog

    See identical proteins and their annotated locations for NP_001090516.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123359
    UniProtKB/TrEMBL
    A0A974H7E9, Q05AU0
    Related
    ENSXLAP00005030500.1, ENSXLAT00005031257.1
    Conserved Domains (1) summary
    pfam02291
    Location:9 → 129
    TFIID-31kDa; Transcription initiation factor IID, 31kD subunit

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    74803915..74818642
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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