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ptdss1.S phosphatidylserine synthase 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 779154, updated on 4-Jan-2025

Summary

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Official Symbol
ptdss1.S
Official Full Name
phosphatidylserine synthase 1 S homeolog
Primary source
Xenbase:XB-GENE-6252982
Locus tag
XELAEV_18033901mg
See related
EnsemblRapid:ENSXLAG00005004948 AllianceGenome:Xenbase:XB-GENE-6252982
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pss1; pssa; ptdss1
Summary
Predicted to enable L-serine-phosphatidylethanolamine phosphatidyltransferase activity. Predicted to act upstream of or within phosphatidylserine biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in Lenz-Majewski hyperostotic dwarfism. Orthologous to human PTDSS1 (phosphatidylserine synthase 1). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See ptdss1.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (116234907..116269975, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (107582856..107618165, complement)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene metadherin S homeolog Neighboring gene syndecan 2 S homeolog Neighboring gene mitochondrial transcription termination factor 3 S homeolog Neighboring gene ubiquinol-cytochrome c reductase binding protein S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82036

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables L-serine-phosphatidylethanolamine phosphatidyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphatidylserine biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within phospholipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
phosphatidylserine synthase 1 S homeolog
NP_001090249.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001096780.1 → NP_001090249.1  phosphatidylserine synthase 1 S homeolog

    See identical proteins and their annotated locations for NP_001090249.1

    Status: PROVISIONAL

    Source sequence(s)
    BC080390
    UniProtKB/TrEMBL
    A0A974HEF9, Q0VGX4
    Related
    ENSXLAP00005014920.1, ENSXLAT00005015118.1
    Conserved Domains (1) summary
    pfam03034
    Location:96 → 372
    PSS; Phosphatidyl serine synthase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    116234907..116269975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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