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ror nuclear receptor [ Ciona intestinalis (vase tunicate) ]

Gene ID: 779001, updated on 28-Oct-2019

Summary

Gene symbol
ror
Gene description
nuclear receptor
See related
Ensembl:ENSCING00000002152
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona
Also known as
Rora; Ci-ROR

Genomic context

See ror in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 3 NC_020168.2 (396586..410205, complement)

Chromosome 3 - NC_020168.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100186384 Neighboring gene fibropellin-1-like Neighboring gene gelsolin Neighboring gene uncharacterized LOC104265485 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene cysteine sulfinic acid decarboxylase

Genomic regions, transcripts, and products

Genomic Sequence:
NC_020168.2 Chromosome 3 Reference KH Primary Assembly

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001078553.1NP_001072021.1  nuclear receptor

    See identical proteins and their annotated locations for NP_001072021.1

    Status: PROVISIONAL

    Source sequence(s)
    AB210670
    UniProtKB/TrEMBL
    Q4H2V2
    Related
    ENSCINP00000022357, ENSCINT00000022603
    Conserved Domains (2) summary
    cd06939
    Location:380618
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:158252
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020168.2 Reference KH Primary Assembly

    Range
    396586..410205 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009859574.3XP_009857876.1  nuclear receptor isoform X1

    UniProtKB/TrEMBL
    A0A1W3JC90
    Conserved Domains (2) summary
    cd06939
    Location:229467
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:7101
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
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