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rev-erb nuclear receptor [ Ciona intestinalis (vase tunicate) ]

Gene ID: 778931, updated on 28-Oct-2019

Summary

Gene symbol
rev-erb
Gene description
nuclear receptor
See related
Ensembl:ENSCING00000002352
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ciona intestinalis
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona

Genomic context

See rev-erb in Genome Data Viewer
Location:
chromosome: 13
Exon count:
10
Annotation release Status Assembly Chr Location
104 current KH (GCF_000224145.3) 13 NC_020178.2 (678937..690974, complement)

Chromosome 13 - NC_020178.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101242471 Neighboring gene N-alpha-acetyltransferase 40 Neighboring gene cytochrome P450 10-like Neighboring gene uncharacterized LOC101242801 Neighboring gene uncharacterized LOC100184500 Neighboring gene uncharacterized LOC113474831 Neighboring gene titin homolog Neighboring gene transfer RNA valine (anticodon CAC)

Genomic regions, transcripts, and products

Genomic Sequence:
NC_020178.2 Chromosome 13 Reference KH Primary Assembly

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001078494.1NP_001071962.1  nuclear receptor

    See identical proteins and their annotated locations for NP_001071962.1

    Status: PROVISIONAL

    Source sequence(s)
    AB210665
    UniProtKB/TrEMBL
    Q4H2V7
    Related
    ENSCINP00000004784, ENSCINT00000004784
    Conserved Domains (2) summary
    cd07166
    Location:42130
    NR_DBD_REV_ERB; DNA-binding domain of REV-ERB receptor-like is composed of two C4-type zinc fingers
    cl11397
    Location:547596
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators

RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KH Primary Assembly

Genomic

  1. NC_020178.2 Reference KH Primary Assembly

    Range
    678937..690974 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009862321.3XP_009860623.1  nuclear receptor isoform X1

    UniProtKB/TrEMBL
    A0A1W3JFE5
    Conserved Domains (2) summary
    cd06929
    Location:547717
    NR_LBD_F1; Ligand-binding domain of nuclear receptor family 1
    cd07166
    Location:42130
    NR_DBD_REV_ERB; DNA-binding domain of REV-ERB receptor-like is composed of two C4-type zinc fingers
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