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ubc ubiquitin C [ Danio rerio (zebrafish) ]

Gene ID: 777766, updated on 25-Jan-2022

Summary

Official Symbol
ubcprovided by ZNC
Official Full Name
ubiquitin Cprovided by ZNC
Primary source
ZFIN:ZDB-GENE-061110-88
See related
Ensembl:ENSDARG00000102632 AllianceGenome:ZFIN:ZDB-GENE-061110-88
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7042025; wu:fb37h06; zgc:153686
Summary
Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to be active in cytoplasm and nucleus. Orthologous to human UBC (ubiquitin C). [provided by Alliance of Genome Resources, Nov 2021]
Orthologs
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Genomic context

See ubc in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (44692226..44694736)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (44845614..44848124)
103 previous assembly Zv9 (GCF_000002035.4) 11 NC_007122.5 (21577562..21580072, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene seizure 6-like protein Neighboring gene tyrosylprotein sulfotransferase 2 Neighboring gene scavenger receptor class B, member 1 Neighboring gene tachykinin receptor 1b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables protein tag IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables ubiquitin protein ligase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in modification-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077804.2NP_001071272.2  polyubiquitin-C

    Status: VALIDATED

    Source sequence(s)
    CU463283
    UniProtKB/TrEMBL
    F1QHN6
    Related
    ENSDARP00000139647.1, ENSDART00000157458.2
    Conserved Domains (2) summary
    cd01803
    Location:77152
    Ubiquitin; Ubiquitin
    smart00213
    Location:172
    UBQ; Ubiquitin homologues

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    44692226..44694736
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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