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HDGF hepatoma-derived growth factor [ Gallus gallus (chicken) ]

Gene ID: 776936, updated on 17-Aug-2024
Symbol
HDGFprovided by CGNC
Full Name
hepatoma-derived growth factorprovided by CGNC
Primary source
CGNC:58434
See related
Ensembl:ENSGALG00010027332
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
HDGFL1
Orthologs
human mouse all
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See HDGF in Genome Data Viewer
Location:
chromosome: 25
Exon count:
6
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 25 NC_052556.1 (1042667..1048083, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 25 NC_052597.1 (1043732..1049134, complement)

Chromosome 25 - NC_052556.1Genomic Context describing neighboring genes Neighboring gene cellular retinoic acid binding protein 2 Neighboring gene interferon stimulated exonuclease gene 20kDa-like 2 Neighboring gene methyltransferase like 25B Neighboring gene mitochondrial ribosomal protein L24 Neighboring gene papillary renal cell carcinoma (translocation-associated) Neighboring gene SH2 domain containing 2A Neighboring gene death-associated protein kinase 2-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
hepatoma-derived growth factor
Names
HDGF like 1
hepatoma-derived growth factor (high-mobility group protein 1-like)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052556.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1042667..1048083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001236426.7 → XP_001236427.2  hepatoma-derived growth factor

    UniProtKB/TrEMBL
    A0A8V1AG33
    Related
    ENSGALP00010040530.1, ENSGALT00010066264.1
    Conserved Domains (2) summary
    cd05834
    Location:8 → 92
    HDGF_related; The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, ...
    TIGR00927
    Location:109 → 229
    2A1904; K+-dependent Na+/Ca+ exchanger

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052597.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1043732..1049134 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040690971.2 → XP_040546905.1  hepatoma-derived growth factor

    UniProtKB/TrEMBL
    A0A8V1AG33
    Conserved Domains (2) summary
    cd05834
    Location:8 → 92
    HDGF_related; The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, ...
    TIGR00927
    Location:109 → 229
    2A1904; K+-dependent Na+/Ca+ exchanger
Nucleotide Protein Strain
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