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Gata3un Gata3 upstream neighbor [ Mus musculus (house mouse) ]

Gene ID: 77682, updated on 24-Jan-2023


Official Symbol
Gata3unprovided by MGI
Official Full Name
Gata3 upstream neighborprovided by MGI
Primary source
See related
Ensembl:ENSMUSG00000079602 AllianceGenome:MGI:1924932
Gene type
RefSeq status
Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
linc_Gata3; 9230102O04Rik
Located in basal dendrite. Is expressed in several structures, including central nervous system; heart; hemolymphoid system gland; inner ear; and metanephros. [provided by Alliance of Genome Resources, Apr 2022]
Biased expression in bladder adult (RPKM 9.8), testis adult (RPKM 9.1) and 6 other tissues See more
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Genomic context

See Gata3un in Genome Data Viewer
2; 2 A1
Exon count:
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (9887852..9894351, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (9883041..9889540, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene distal regulatory enhancer RNA of Gata3 Neighboring gene predicted gene, 54101 Neighboring gene GATA binding protein 3 Neighboring gene GATA binding protein 3 opposite strand Neighboring gene predicted gene 13262 Neighboring gene predicted gene, 31290 Neighboring gene TATA-box binding protein associated factor 3

Genomic regions, transcripts, and products


  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a



Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
Component Evidence Code Pubs
is_active_in basal dendrite IDA
Inferred from Direct Assay
more info

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.


  1. NR_040511.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK020309, AL928704

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J


  1. NC_000068.8 Reference GRCm39 C57BL/6J

    9887852..9894351 complement
    GenBank, FASTA, Sequence Viewer (Graphics)