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9330179D12Rik RIKEN cDNA 9330179D12 gene [ Mus musculus (house mouse) ]

Gene ID: 77558, updated on 8-Feb-2024

Summary

Official Symbol
9330179D12Rikprovided by MGI
Official Full Name
RIKEN cDNA 9330179D12 geneprovided by MGI
Primary source
MGI:MGI:1924808
See related
Ensembl:ENSMUSG00000097166 AllianceGenome:MGI:1924808
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in cortex adult (RPKM 1.1), bladder adult (RPKM 1.0) and 21 other tissues See more
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Genomic context

See 9330179D12Rik in Genome Data Viewer
Location:
6 F3; 6 61.92 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (127126352..127189382)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (127149389..127212419)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor 23 Neighboring gene STARR-seq mESC enhancer starr_17405 Neighboring gene Trp53 induced glycolysis regulatory phosphatase Neighboring gene STARR-positive B cell enhancer ABC_E2208 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:127059715-127059898 Neighboring gene STARR-seq mESC enhancer starr_17406 Neighboring gene cyclin D2 Neighboring gene STARR-positive B cell enhancer ABC_E2805 Neighboring gene STARR-positive B cell enhancer ABC_E9676 Neighboring gene STARR-seq mESC enhancer starr_17407 Neighboring gene eukaryotic translation elongation factor 1 gamma pseudogene Neighboring gene triosephosphate isomerase related sequence 11 Neighboring gene STARR-positive B cell enhancer ABC_E440 Neighboring gene STARR-positive B cell enhancer ABC_E2806 Neighboring gene STARR-positive B cell enhancer ABC_E2209 Neighboring gene STARR-seq mESC enhancer starr_17408 Neighboring gene VISTA enhancer mm1531 Neighboring gene ribosomal protein S2 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E4866 Neighboring gene STARR-seq mESC enhancer starr_17411 Neighboring gene STARR-positive B cell enhancer ABC_E6492 Neighboring gene calmodulin 2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040273.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC161597, AK020388, CX238860
  2. NR_040274.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and uses an alternate exon in the 5' region, compared to variant 1.
    Source sequence(s)
    AC161597, AK043994
    Related
    ENSMUST00000180811.3
  3. NR_040275.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AC161597, AK020388
    Related
    ENSMUST00000180569.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    127126352..127189382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)