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shoB [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 7751620, updated on 24-Aug-2024

Summary

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Official Symbol
shoB
Primary source
ECOCYC:G0-10634
Locus tag
b4687
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
b4681; ECK4502; ryfB; yphI
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Genomic context

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Sequence:
NC_000913.3 (2700117..2700197, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator YfhH Neighboring gene putative 4Fe-4S cluster-containing protein YfhL Neighboring gene ncRNA Neighboring gene holo-[acyl-carrier-protein] synthase Neighboring gene pyridoxine 5'-phosphate synthase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli. Kawano M, et al. Nucleic Acids Res, 2005. PMID 15718303, Free PMC Article
  2. Hydrophobic peptides: novel regulators within bacterial membrane. Alix E, et al. Mol Microbiol, 2009 Apr. PMID 19210615
  3. Repression of small toxic protein synthesis by the Sib and OhsC small RNAs. Fozo EM, et al. Mol Microbiol, 2008 Dec. PMID 18710431, Free PMC Article
  4. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
  5. Small membrane proteins found by comparative genomics and ribosome binding site models. Hemm MR, et al. Mol Microbiol, 2008 Dec. PMID 19121005, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within programmed cell death IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
toxic peptide ShoB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2700117..2700197 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_002791251.1 toxic peptide ShoB [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for YP_002791251.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1X3J2P7, A0A1X3JFC8, A7ZQ06
Nucleotide Protein
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