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C330018D20Rik RIKEN cDNA C330018D20 gene [ Mus musculus (house mouse) ]

Gene ID: 77422, updated on 5-Mar-2024

Summary

Official Symbol
C330018D20Rikprovided by MGI
Official Full Name
RIKEN cDNA C330018D20 geneprovided by MGI
Primary source
MGI:MGI:1924672
See related
Ensembl:ENSMUSG00000024592 AllianceGenome:MGI:1924672
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Located in mitochondrion. Orthologous to human C5orf63 (chromosome 5 open reading frame 63). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 3.6), liver E14 (RPKM 3.4) and 24 other tissues See more
Orthologs
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Genomic context

See C330018D20Rik in Genome Data Viewer
Location:
18 D3; 18 31.22 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (57088900..57108460, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (56955828..56975379, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene membrane associated ring-CH-type finger 3 Neighboring gene STARR-positive B cell enhancer ABC_E1959 Neighboring gene ribosomal protein S3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_44682 Neighboring gene predicted gene, 34632 Neighboring gene predicted gene 10536 Neighboring gene mitochondrial ribosomal protein L35 pseudogene Neighboring gene polymerase (RNA) II (DNA directed) polypeptide K pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General protein information

Preferred Names
glutaredoxin-like protein C5orf63 homolog
Names
glutaredoxin-like protein YDR286C homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029909.1NP_084185.1  glutaredoxin-like protein C5orf63 homolog

    See identical proteins and their annotated locations for NP_084185.1

    Status: VALIDATED

    Source sequence(s)
    AC109152, AK140255, CD561591
    Consensus CDS
    CCDS50293.1
    UniProtKB/Swiss-Prot
    Q9CWB7
    Related
    ENSMUSP00000025488.9, ENSMUST00000025488.15
    Conserved Domains (1) summary
    pfam05768
    Location:32104
    DUF836; Glutaredoxin-like domain (DUF836)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    57088900..57108460 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006526351.5XP_006526414.1  glutaredoxin-like protein C5orf63 homolog isoform X1

    See identical proteins and their annotated locations for XP_006526414.1

    UniProtKB/Swiss-Prot
    Q9CWB7
    Related
    ENSMUSP00000116181.3, ENSMUST00000139243.9
    Conserved Domains (1) summary
    pfam05768
    Location:32104
    DUF836; Glutaredoxin-like domain (DUF836)