5430403G16Rik RIKEN cDNA 5430403G16 gene [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: 5430403G16Rikprovided by MGI
Official Full Name: RIKEN cDNA 5430403G16 geneprovided by MGI
Primary source: MGI:MGI:1924450
See related: Ensembl:ENSMUSG00000072763 AllianceGenome:MGI:1924450
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

Location:: 5 F; 5

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
109	current	GRCm39 (GCF_000001635.27)	5	NC_000071.7 (109822409..109838700, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	5	NC_000071.6 (109674543..109690834, complement)

Chromosome 5 - NC_000071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific	ISO Inferred from Sequence Orthology more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info	PubMed

Component	Evidence Code	Pubs
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: uncharacterized protein LOC77200

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001378588.1 → NP_001365517.1 uncharacterized protein LOC77200

Status: VALIDATED

Source sequence(s)

AC116718

UniProtKB/TrEMBL

D3Z5L4

Related

ENSMUSP00000090395.4, ENSMUST00000092720.4

Conserved Domains (5) summary

COG5048
Location:157 → 533

COG5048; FOG: Zn-finger [General function prediction only]

COG5189
Location:100 → 177

SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

sd00017
Location:161 → 181

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam01352
Location:4 → 44

KRAB; KRAB box

pfam13465
Location:621 → 646

zf-H2C2_2; Zinc-finger double domain