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GTF2E2 general transcription factor IIE subunit 2 [ Gallus gallus (chicken) ]

Gene ID: 771227, updated on 20-Jun-2018

Summary

Symbol
GTF2E2provided by CGNC
Full Name
general transcription factor IIE subunit 2provided by CGNC
Primary source
CGNC:56614
See related
Ensembl:ENSGALG00000010283
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs

Genomic context

See GTF2E2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
104 current GRCg6a (GCF_000002315.5) 4 NC_006091.5 (34710353..34735230)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 4 NC_006091.4 (34972641..34997469)

Chromosome 4 - NC_006091.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112532416 Neighboring gene protein phosphatase 2 catalytic subunit beta Neighboring gene purine rich element binding protein G Neighboring gene Werner syndrome RecQ like helicase Neighboring gene small integral membrane protein 18 Neighboring gene RNA binding protein, mRNA processing factor Neighboring gene microRNA 6591 Neighboring gene dynactin subunit 6

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

General protein information

Preferred Names
transcription initiation factor IIE subunit beta
Names
general transcription factor IIE, polypeptide 2, beta 34kDa

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012888.1NP_001012906.1  transcription initiation factor IIE subunit beta

    See identical proteins and their annotated locations for NP_001012906.1

    Status: VALIDATED

    Source sequence(s)
    AJ720843
    UniProtKB/TrEMBL
    Q5ZIE1
    Related
    ENSGALP00000016708.1, ENSGALT00000016727.3
    Conserved Domains (2) summary
    cd07977
    Location:67145
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
    pfam12952
    Location:222273
    DUF3841; Domain of unknown function (DUF3841)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCg6a Primary Assembly

Genomic

  1. NC_006091.5 Reference GRCg6a Primary Assembly

    Range
    34710353..34735230
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015276331.2XP_015131817.1  transcription initiation factor IIE subunit beta isoform X1

    UniProtKB/TrEMBL
    Q5ZIE1
    Conserved Domains (2) summary
    cd07977
    Location:67145
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
    pfam12952
    Location:222273
    DUF3841; Domain of unknown function (DUF3841)
  2. XM_001233399.5XP_001233400.1  transcription initiation factor IIE subunit beta isoform X1

    See identical proteins and their annotated locations for XP_001233400.1

    UniProtKB/TrEMBL
    Q5ZIE1
    Related
    ENSGALP00000048726.1
    Conserved Domains (2) summary
    cd07977
    Location:67145
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
    pfam12952
    Location:222273
    DUF3841; Domain of unknown function (DUF3841)
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