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CHAF1A chromatin assembly factor 1 subunit A [ Gallus gallus (chicken) ]

Gene ID: 770217, updated on 3-Dec-2024
Symbol
CHAF1Aprovided by CGNC
Full Name
chromatin assembly factor 1 subunit Aprovided by CGNC
Primary source
CGNC:763
See related
Ensembl:ENSGALG00010027202
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
CAIP150; CAF-1P150; CAF-Ip150; CAF-I-p150
Orthologs
human mouse all
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See CHAF1A in Genome Data Viewer
Location:
chromosome: 28
Exon count:
16
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 28 NC_052559.1 (2941543..2956450)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 28 NC_052600.1 (2507591..2522498)

Chromosome 28 - NC_052559.1Genomic Context describing neighboring genes Neighboring gene MIER family member 2 Neighboring gene SH3 domain containing GRB2 like 1, endophilin A2 Neighboring gene UBX domain protein 6 Neighboring gene hepatoma-derived growth factor-related protein 2

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. WD repeats of the p48 subunit of chicken chromatin assembly factor-1 required for in vitro interaction with chicken histone deacetylase-2. Ahmad A, et al. J Biol Chem, 1999 Jun 4. PMID 10347232
  2. Essential role of chromatin assembly factor-1-mediated rapid nucleosome assembly for DNA replication and cell division in vertebrate cells. Takami Y, et al. Mol Biol Cell, 2007 Jan. PMID 17065558, Free PMC Article
  3. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  4. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Depletion of CAF-1p150 and p60 led to delayed S-phase progression concomitant with slow DNA synthesis, followed by accumulation in late S/G2 phase.
    Title: Essential role of chromatin assembly factor-1-mediated rapid nucleosome assembly for DNA replication and cell division in vertebrate cells.
Submit: New GeneRIF Correction
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CAF-1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
chromatin assembly factor 1 subunit A
Names
CAF-1 subunit A
CAF-I 150 kDa subunit
CAF-I p150
chromatin assembly factor 1, subunit A (p150)
chromatin assembly factor I p150 subunit
chromatin assembly factor-1p150

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079752.3 → NP_001073220.3  chromatin assembly factor 1 subunit A

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000375
    UniProtKB/Swiss-Prot
    Q5R1T0, Q5ZK85
    Related
    ENSGALP00010040217.1, ENSGALT00010065951.1
    Conserved Domains (1) summary
    pfam15557
    Location:2 → 174
    CAF1-p150_N; CAF1 complex subunit p150, region binding to PCNA

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052559.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2941543..2956450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015299949.4 → XP_015155435.2  chromatin assembly factor 1 subunit A isoform X1

    UniProtKB/Swiss-Prot
    Q5R1T0, Q5ZK85
    UniProtKB/TrEMBL
    A0A8V1ADA2
    Related
    ENSGALP00010040219.1, ENSGALT00010065953.1
    Conserved Domains (1) summary
    pfam15557
    Location:1 → 171
    CAF1-p150_N; CAF1 complex subunit p150, region binding to PCNA

  2. XM_040653579.2 → XP_040509513.1  chromatin assembly factor 1 subunit A isoform X1

    UniProtKB/Swiss-Prot
    Q5R1T0, Q5ZK85
    UniProtKB/TrEMBL
    A0A8V1ADA2
    Conserved Domains (1) summary
    pfam15557
    Location:1 → 171
    CAF1-p150_N; CAF1 complex subunit p150, region binding to PCNA

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052600.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2507591..2522498
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046933884.1 → XP_046789840.1  chromatin assembly factor 1 subunit A isoform X1

    UniProtKB/Swiss-Prot
    Q5R1T0, Q5ZK85

  2. XM_046933883.1 → XP_046789839.1  chromatin assembly factor 1 subunit A isoform X1

    UniProtKB/Swiss-Prot
    Q5R1T0, Q5ZK85
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5R1T0.1 GenPept UniProtKB/Swiss-Prot:Q5R1T0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials